{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "32ba5a6a",
   "metadata": {},
   "outputs": [],
   "source": [
    "import pandas as pd\n",
    "import numpy as np"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "acc9210f",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
       "    .dataframe tbody tr th:only-of-type {\n",
       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>ImageNumber</th>\n",
       "      <th>ObjectNumber</th>\n",
       "      <th>FileName_Cyto</th>\n",
       "      <th>FileName_Nuclei</th>\n",
       "      <th>FileName_Soma</th>\n",
       "      <th>PathName_Cyto</th>\n",
       "      <th>PathName_Nuclei</th>\n",
       "      <th>PathName_Soma</th>\n",
       "      <th>AreaShape_Area</th>\n",
       "      <th>AreaShape_BoundingBoxArea</th>\n",
       "      <th>...</th>\n",
       "      <th>Neighbors_FirstClosestObjectNumber_Adjacent</th>\n",
       "      <th>Neighbors_NumberOfNeighbors_5</th>\n",
       "      <th>Neighbors_NumberOfNeighbors_Adjacent</th>\n",
       "      <th>Neighbors_PercentTouching_5</th>\n",
       "      <th>Neighbors_PercentTouching_Adjacent</th>\n",
       "      <th>Neighbors_SecondClosestDistance_5</th>\n",
       "      <th>Neighbors_SecondClosestDistance_Adjacent</th>\n",
       "      <th>Neighbors_SecondClosestObjectNumber_5</th>\n",
       "      <th>Neighbors_SecondClosestObjectNumber_Adjacent</th>\n",
       "      <th>Number_Object_Number</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>1</td>\n",
       "      <td>1</td>\n",
       "      <td>F000_max_clean_Cyto.tiff</td>\n",
       "      <td>F000_max_clean_Nuclei.tiff</td>\n",
       "      <td>F000_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>630</td>\n",
       "      <td>784</td>\n",
       "      <td>...</td>\n",
       "      <td>5</td>\n",
       "      <td>1.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>14.159292</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>121.732306</td>\n",
       "      <td>121.732306</td>\n",
       "      <td>25</td>\n",
       "      <td>25</td>\n",
       "      <td>1</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>1</td>\n",
       "      <td>2</td>\n",
       "      <td>F000_max_clean_Cyto.tiff</td>\n",
       "      <td>F000_max_clean_Nuclei.tiff</td>\n",
       "      <td>F000_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>529</td>\n",
       "      <td>728</td>\n",
       "      <td>...</td>\n",
       "      <td>11</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>84.022124</td>\n",
       "      <td>84.022124</td>\n",
       "      <td>15</td>\n",
       "      <td>15</td>\n",
       "      <td>2</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>1</td>\n",
       "      <td>3</td>\n",
       "      <td>F000_max_clean_Cyto.tiff</td>\n",
       "      <td>F000_max_clean_Nuclei.tiff</td>\n",
       "      <td>F000_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>996</td>\n",
       "      <td>2220</td>\n",
       "      <td>...</td>\n",
       "      <td>9</td>\n",
       "      <td>2.0</td>\n",
       "      <td>2.0</td>\n",
       "      <td>68.720379</td>\n",
       "      <td>49.763033</td>\n",
       "      <td>60.608189</td>\n",
       "      <td>60.608189</td>\n",
       "      <td>6</td>\n",
       "      <td>6</td>\n",
       "      <td>3</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>1</td>\n",
       "      <td>4</td>\n",
       "      <td>F000_max_clean_Cyto.tiff</td>\n",
       "      <td>F000_max_clean_Nuclei.tiff</td>\n",
       "      <td>F000_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>480</td>\n",
       "      <td>600</td>\n",
       "      <td>...</td>\n",
       "      <td>20</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>69.513905</td>\n",
       "      <td>69.513905</td>\n",
       "      <td>21</td>\n",
       "      <td>21</td>\n",
       "      <td>4</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>1</td>\n",
       "      <td>5</td>\n",
       "      <td>F000_max_clean_Cyto.tiff</td>\n",
       "      <td>F000_max_clean_Nuclei.tiff</td>\n",
       "      <td>F000_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>998</td>\n",
       "      <td>1440</td>\n",
       "      <td>...</td>\n",
       "      <td>1</td>\n",
       "      <td>1.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>10.666667</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>104.233161</td>\n",
       "      <td>104.233161</td>\n",
       "      <td>25</td>\n",
       "      <td>25</td>\n",
       "      <td>5</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1917</th>\n",
       "      <td>6</td>\n",
       "      <td>324</td>\n",
       "      <td>F005_max_clean_Cyto.tiff</td>\n",
       "      <td>F005_max_clean_Nuclei.tiff</td>\n",
       "      <td>F005_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>1053</td>\n",
       "      <td>1512</td>\n",
       "      <td>...</td>\n",
       "      <td>321</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>118.057911</td>\n",
       "      <td>118.057911</td>\n",
       "      <td>316</td>\n",
       "      <td>316</td>\n",
       "      <td>324</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1918</th>\n",
       "      <td>6</td>\n",
       "      <td>325</td>\n",
       "      <td>F005_max_clean_Cyto.tiff</td>\n",
       "      <td>F005_max_clean_Nuclei.tiff</td>\n",
       "      <td>F005_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>553</td>\n",
       "      <td>837</td>\n",
       "      <td>...</td>\n",
       "      <td>322</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>236.090919</td>\n",
       "      <td>236.090919</td>\n",
       "      <td>307</td>\n",
       "      <td>307</td>\n",
       "      <td>325</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1919</th>\n",
       "      <td>6</td>\n",
       "      <td>326</td>\n",
       "      <td>F005_max_clean_Cyto.tiff</td>\n",
       "      <td>F005_max_clean_Nuclei.tiff</td>\n",
       "      <td>F005_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>999</td>\n",
       "      <td>2400</td>\n",
       "      <td>...</td>\n",
       "      <td>320</td>\n",
       "      <td>1.0</td>\n",
       "      <td>1.0</td>\n",
       "      <td>33.333333</td>\n",
       "      <td>22.058824</td>\n",
       "      <td>134.337091</td>\n",
       "      <td>134.337091</td>\n",
       "      <td>318</td>\n",
       "      <td>318</td>\n",
       "      <td>326</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1920</th>\n",
       "      <td>6</td>\n",
       "      <td>327</td>\n",
       "      <td>F005_max_clean_Cyto.tiff</td>\n",
       "      <td>F005_max_clean_Nuclei.tiff</td>\n",
       "      <td>F005_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>628</td>\n",
       "      <td>868</td>\n",
       "      <td>...</td>\n",
       "      <td>310</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.0</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>0.000000</td>\n",
       "      <td>172.346562</td>\n",
       "      <td>172.346562</td>\n",
       "      <td>312</td>\n",
       "      <td>312</td>\n",
       "      <td>327</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1921</th>\n",
       "      <td>6</td>\n",
       "      <td>328</td>\n",
       "      <td>F005_max_clean_Cyto.tiff</td>\n",
       "      <td>F005_max_clean_Nuclei.tiff</td>\n",
       "      <td>F005_max_clean_Soma.tiff</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>1044</td>\n",
       "      <td>1554</td>\n",
       "      <td>...</td>\n",
       "      <td>323</td>\n",
       "      <td>1.0</td>\n",
       "      <td>1.0</td>\n",
       "      <td>36.516854</td>\n",
       "      <td>26.404494</td>\n",
       "      <td>49.973304</td>\n",
       "      <td>49.973304</td>\n",
       "      <td>319</td>\n",
       "      <td>319</td>\n",
       "      <td>328</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>1922 rows × 51 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "      ImageNumber  ObjectNumber             FileName_Cyto  \\\n",
       "0               1             1  F000_max_clean_Cyto.tiff   \n",
       "1               1             2  F000_max_clean_Cyto.tiff   \n",
       "2               1             3  F000_max_clean_Cyto.tiff   \n",
       "3               1             4  F000_max_clean_Cyto.tiff   \n",
       "4               1             5  F000_max_clean_Cyto.tiff   \n",
       "...           ...           ...                       ...   \n",
       "1917            6           324  F005_max_clean_Cyto.tiff   \n",
       "1918            6           325  F005_max_clean_Cyto.tiff   \n",
       "1919            6           326  F005_max_clean_Cyto.tiff   \n",
       "1920            6           327  F005_max_clean_Cyto.tiff   \n",
       "1921            6           328  F005_max_clean_Cyto.tiff   \n",
       "\n",
       "                 FileName_Nuclei             FileName_Soma  \\\n",
       "0     F000_max_clean_Nuclei.tiff  F000_max_clean_Soma.tiff   \n",
       "1     F000_max_clean_Nuclei.tiff  F000_max_clean_Soma.tiff   \n",
       "2     F000_max_clean_Nuclei.tiff  F000_max_clean_Soma.tiff   \n",
       "3     F000_max_clean_Nuclei.tiff  F000_max_clean_Soma.tiff   \n",
       "4     F000_max_clean_Nuclei.tiff  F000_max_clean_Soma.tiff   \n",
       "...                          ...                       ...   \n",
       "1917  F005_max_clean_Nuclei.tiff  F005_max_clean_Soma.tiff   \n",
       "1918  F005_max_clean_Nuclei.tiff  F005_max_clean_Soma.tiff   \n",
       "1919  F005_max_clean_Nuclei.tiff  F005_max_clean_Soma.tiff   \n",
       "1920  F005_max_clean_Nuclei.tiff  F005_max_clean_Soma.tiff   \n",
       "1921  F005_max_clean_Nuclei.tiff  F005_max_clean_Soma.tiff   \n",
       "\n",
       "                                          PathName_Cyto  \\\n",
       "0     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "2     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "3     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "4     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "...                                                 ...   \n",
       "1917  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1918  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1919  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1920  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1921  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "\n",
       "                                        PathName_Nuclei  \\\n",
       "0     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "2     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "3     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "4     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "...                                                 ...   \n",
       "1917  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1918  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1919  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1920  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "1921  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...   \n",
       "\n",
       "                                          PathName_Soma  AreaShape_Area  \\\n",
       "0     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             630   \n",
       "1     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             529   \n",
       "2     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             996   \n",
       "3     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             480   \n",
       "4     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             998   \n",
       "...                                                 ...             ...   \n",
       "1917  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...            1053   \n",
       "1918  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             553   \n",
       "1919  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             999   \n",
       "1920  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             628   \n",
       "1921  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...            1044   \n",
       "\n",
       "      AreaShape_BoundingBoxArea  ...  \\\n",
       "0                           784  ...   \n",
       "1                           728  ...   \n",
       "2                          2220  ...   \n",
       "3                           600  ...   \n",
       "4                          1440  ...   \n",
       "...                         ...  ...   \n",
       "1917                       1512  ...   \n",
       "1918                        837  ...   \n",
       "1919                       2400  ...   \n",
       "1920                        868  ...   \n",
       "1921                       1554  ...   \n",
       "\n",
       "      Neighbors_FirstClosestObjectNumber_Adjacent  \\\n",
       "0                                               5   \n",
       "1                                              11   \n",
       "2                                               9   \n",
       "3                                              20   \n",
       "4                                               1   \n",
       "...                                           ...   \n",
       "1917                                          321   \n",
       "1918                                          322   \n",
       "1919                                          320   \n",
       "1920                                          310   \n",
       "1921                                          323   \n",
       "\n",
       "      Neighbors_NumberOfNeighbors_5  Neighbors_NumberOfNeighbors_Adjacent  \\\n",
       "0                               1.0                                   0.0   \n",
       "1                               0.0                                   0.0   \n",
       "2                               2.0                                   2.0   \n",
       "3                               0.0                                   0.0   \n",
       "4                               1.0                                   0.0   \n",
       "...                             ...                                   ...   \n",
       "1917                            0.0                                   0.0   \n",
       "1918                            0.0                                   0.0   \n",
       "1919                            1.0                                   1.0   \n",
       "1920                            0.0                                   0.0   \n",
       "1921                            1.0                                   1.0   \n",
       "\n",
       "      Neighbors_PercentTouching_5  Neighbors_PercentTouching_Adjacent  \\\n",
       "0                       14.159292                            0.000000   \n",
       "1                        0.000000                            0.000000   \n",
       "2                       68.720379                           49.763033   \n",
       "3                        0.000000                            0.000000   \n",
       "4                       10.666667                            0.000000   \n",
       "...                           ...                                 ...   \n",
       "1917                     0.000000                            0.000000   \n",
       "1918                     0.000000                            0.000000   \n",
       "1919                    33.333333                           22.058824   \n",
       "1920                     0.000000                            0.000000   \n",
       "1921                    36.516854                           26.404494   \n",
       "\n",
       "      Neighbors_SecondClosestDistance_5  \\\n",
       "0                            121.732306   \n",
       "1                             84.022124   \n",
       "2                             60.608189   \n",
       "3                             69.513905   \n",
       "4                            104.233161   \n",
       "...                                 ...   \n",
       "1917                         118.057911   \n",
       "1918                         236.090919   \n",
       "1919                         134.337091   \n",
       "1920                         172.346562   \n",
       "1921                          49.973304   \n",
       "\n",
       "      Neighbors_SecondClosestDistance_Adjacent  \\\n",
       "0                                   121.732306   \n",
       "1                                    84.022124   \n",
       "2                                    60.608189   \n",
       "3                                    69.513905   \n",
       "4                                   104.233161   \n",
       "...                                        ...   \n",
       "1917                                118.057911   \n",
       "1918                                236.090919   \n",
       "1919                                134.337091   \n",
       "1920                                172.346562   \n",
       "1921                                 49.973304   \n",
       "\n",
       "      Neighbors_SecondClosestObjectNumber_5  \\\n",
       "0                                        25   \n",
       "1                                        15   \n",
       "2                                         6   \n",
       "3                                        21   \n",
       "4                                        25   \n",
       "...                                     ...   \n",
       "1917                                    316   \n",
       "1918                                    307   \n",
       "1919                                    318   \n",
       "1920                                    312   \n",
       "1921                                    319   \n",
       "\n",
       "      Neighbors_SecondClosestObjectNumber_Adjacent  Number_Object_Number  \n",
       "0                                               25                     1  \n",
       "1                                               15                     2  \n",
       "2                                                6                     3  \n",
       "3                                               21                     4  \n",
       "4                                               25                     5  \n",
       "...                                            ...                   ...  \n",
       "1917                                           316                   324  \n",
       "1918                                           307                   325  \n",
       "1919                                           318                   326  \n",
       "1920                                           312                   327  \n",
       "1921                                           319                   328  \n",
       "\n",
       "[1922 rows x 51 columns]"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "cp = pd.read_csv('./seg/SegFeatSoma_.csv')\n",
    "cp"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "634a8d4e",
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>ImageNumber</th>\n",
       "      <th>ObjectNumber</th>\n",
       "      <th>FileName_max_clean</th>\n",
       "      <th>PathName_max_clean</th>\n",
       "      <th>AreaShape_Area</th>\n",
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       "      <th>AreaShape_BoundingBoxMaximum_X</th>\n",
       "      <th>AreaShape_BoundingBoxMaximum_Y</th>\n",
       "      <th>AreaShape_BoundingBoxMinimum_X</th>\n",
       "      <th>AreaShape_BoundingBoxMinimum_Y</th>\n",
       "      <th>...</th>\n",
       "      <th>Neighbors_NumberOfNeighbors_Adjacent</th>\n",
       "      <th>Neighbors_PercentTouching_5</th>\n",
       "      <th>Neighbors_PercentTouching_Adjacent</th>\n",
       "      <th>Neighbors_SecondClosestDistance_5</th>\n",
       "      <th>Neighbors_SecondClosestDistance_Adjacent</th>\n",
       "      <th>Neighbors_SecondClosestObjectNumber_5</th>\n",
       "      <th>Neighbors_SecondClosestObjectNumber_Adjacent</th>\n",
       "      <th>Number_Object_Number</th>\n",
       "      <th>Parent_FilteredNuclei</th>\n",
       "      <th>Parent_Nuclei</th>\n",
       "    </tr>\n",
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       "      <td>F000_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>630</td>\n",
       "      <td>784</td>\n",
       "      <td>1534</td>\n",
       "      <td>31</td>\n",
       "      <td>1506</td>\n",
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       "      <td>1</td>\n",
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       "      <td>F000_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>529</td>\n",
       "      <td>728</td>\n",
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       "      <th>2</th>\n",
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       "      <td>F000_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>996</td>\n",
       "      <td>2220</td>\n",
       "      <td>1250</td>\n",
       "      <td>63</td>\n",
       "      <td>1190</td>\n",
       "      <td>26</td>\n",
       "      <td>...</td>\n",
       "      <td>2.0</td>\n",
       "      <td>68.720379</td>\n",
       "      <td>49.763033</td>\n",
       "      <td>60.608189</td>\n",
       "      <td>60.608189</td>\n",
       "      <td>6</td>\n",
       "      <td>6</td>\n",
       "      <td>3</td>\n",
       "      <td>3</td>\n",
       "      <td>6</td>\n",
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       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>1</td>\n",
       "      <td>4</td>\n",
       "      <td>F000_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>480</td>\n",
       "      <td>600</td>\n",
       "      <td>54</td>\n",
       "      <td>56</td>\n",
       "      <td>30</td>\n",
       "      <td>31</td>\n",
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       "      <td>21</td>\n",
       "      <td>21</td>\n",
       "      <td>4</td>\n",
       "      <td>4</td>\n",
       "      <td>7</td>\n",
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       "      <th>4</th>\n",
       "      <td>1</td>\n",
       "      <td>5</td>\n",
       "      <td>F000_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>998</td>\n",
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       "      <td>1559</td>\n",
       "      <td>70</td>\n",
       "      <td>1527</td>\n",
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       "      <td>25</td>\n",
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       "      <td>5</td>\n",
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       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
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       "      <th>1917</th>\n",
       "      <td>6</td>\n",
       "      <td>324</td>\n",
       "      <td>F005_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>1053</td>\n",
       "      <td>1512</td>\n",
       "      <td>406</td>\n",
       "      <td>1995</td>\n",
       "      <td>379</td>\n",
       "      <td>1939</td>\n",
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       "      <td>0.0</td>\n",
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       "      <td>0.000000</td>\n",
       "      <td>118.057911</td>\n",
       "      <td>118.057911</td>\n",
       "      <td>316</td>\n",
       "      <td>316</td>\n",
       "      <td>324</td>\n",
       "      <td>324</td>\n",
       "      <td>328</td>\n",
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       "    <tr>\n",
       "      <th>1918</th>\n",
       "      <td>6</td>\n",
       "      <td>325</td>\n",
       "      <td>F005_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>553</td>\n",
       "      <td>837</td>\n",
       "      <td>1916</td>\n",
       "      <td>1983</td>\n",
       "      <td>1885</td>\n",
       "      <td>1956</td>\n",
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       "      <td>74.524847</td>\n",
       "      <td>74.524847</td>\n",
       "      <td>307</td>\n",
       "      <td>307</td>\n",
       "      <td>325</td>\n",
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       "      <th>1919</th>\n",
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       "      <td>F005_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>999</td>\n",
       "      <td>2400</td>\n",
       "      <td>1531</td>\n",
       "      <td>2010</td>\n",
       "      <td>1491</td>\n",
       "      <td>1950</td>\n",
       "      <td>...</td>\n",
       "      <td>2.0</td>\n",
       "      <td>52.450980</td>\n",
       "      <td>34.803922</td>\n",
       "      <td>41.370820</td>\n",
       "      <td>41.370820</td>\n",
       "      <td>318</td>\n",
       "      <td>318</td>\n",
       "      <td>326</td>\n",
       "      <td>326</td>\n",
       "      <td>330</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1920</th>\n",
       "      <td>6</td>\n",
       "      <td>327</td>\n",
       "      <td>F005_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>628</td>\n",
       "      <td>868</td>\n",
       "      <td>1089</td>\n",
       "      <td>1997</td>\n",
       "      <td>1058</td>\n",
       "      <td>1969</td>\n",
       "      <td>...</td>\n",
       "      <td>1.0</td>\n",
       "      <td>44.347826</td>\n",
       "      <td>35.652174</td>\n",
       "      <td>161.813879</td>\n",
       "      <td>161.813879</td>\n",
       "      <td>312</td>\n",
       "      <td>312</td>\n",
       "      <td>327</td>\n",
       "      <td>327</td>\n",
       "      <td>331</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1921</th>\n",
       "      <td>6</td>\n",
       "      <td>328</td>\n",
       "      <td>F005_max_clean.tif</td>\n",
       "      <td>/home/imaging/Desktop/Brian/NAS/Brian/101222_D...</td>\n",
       "      <td>1044</td>\n",
       "      <td>1554</td>\n",
       "      <td>636</td>\n",
       "      <td>2008</td>\n",
       "      <td>599</td>\n",
       "      <td>1966</td>\n",
       "      <td>...</td>\n",
       "      <td>1.0</td>\n",
       "      <td>36.516854</td>\n",
       "      <td>26.404494</td>\n",
       "      <td>49.973304</td>\n",
       "      <td>49.973304</td>\n",
       "      <td>319</td>\n",
       "      <td>319</td>\n",
       "      <td>328</td>\n",
       "      <td>328</td>\n",
       "      <td>332</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>1922 rows × 50 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "      ImageNumber  ObjectNumber  FileName_max_clean  \\\n",
       "0               1             1  F000_max_clean.tif   \n",
       "1               1             2  F000_max_clean.tif   \n",
       "2               1             3  F000_max_clean.tif   \n",
       "3               1             4  F000_max_clean.tif   \n",
       "4               1             5  F000_max_clean.tif   \n",
       "...           ...           ...                 ...   \n",
       "1917            6           324  F005_max_clean.tif   \n",
       "1918            6           325  F005_max_clean.tif   \n",
       "1919            6           326  F005_max_clean.tif   \n",
       "1920            6           327  F005_max_clean.tif   \n",
       "1921            6           328  F005_max_clean.tif   \n",
       "\n",
       "                                     PathName_max_clean  AreaShape_Area  \\\n",
       "0     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             630   \n",
       "1     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             529   \n",
       "2     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             996   \n",
       "3     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             480   \n",
       "4     /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             998   \n",
       "...                                                 ...             ...   \n",
       "1917  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...            1053   \n",
       "1918  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             553   \n",
       "1919  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             999   \n",
       "1920  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...             628   \n",
       "1921  /home/imaging/Desktop/Brian/NAS/Brian/101222_D...            1044   \n",
       "\n",
       "      AreaShape_BoundingBoxArea  AreaShape_BoundingBoxMaximum_X  \\\n",
       "0                           784                            1534   \n",
       "1                           728                            1744   \n",
       "2                          2220                            1250   \n",
       "3                           600                              54   \n",
       "4                          1440                            1559   \n",
       "...                         ...                             ...   \n",
       "1917                       1512                             406   \n",
       "1918                        837                            1916   \n",
       "1919                       2400                            1531   \n",
       "1920                        868                            1089   \n",
       "1921                       1554                             636   \n",
       "\n",
       "      AreaShape_BoundingBoxMaximum_Y  AreaShape_BoundingBoxMinimum_X  \\\n",
       "0                                 31                            1506   \n",
       "1                                 48                            1716   \n",
       "2                                 63                            1190   \n",
       "3                                 56                              30   \n",
       "4                                 70                            1527   \n",
       "...                              ...                             ...   \n",
       "1917                            1995                             379   \n",
       "1918                            1983                            1885   \n",
       "1919                            2010                            1491   \n",
       "1920                            1997                            1058   \n",
       "1921                            2008                             599   \n",
       "\n",
       "      AreaShape_BoundingBoxMinimum_Y  ...  \\\n",
       "0                                  3  ...   \n",
       "1                                 22  ...   \n",
       "2                                 26  ...   \n",
       "3                                 31  ...   \n",
       "4                                 25  ...   \n",
       "...                              ...  ...   \n",
       "1917                            1939  ...   \n",
       "1918                            1956  ...   \n",
       "1919                            1950  ...   \n",
       "1920                            1969  ...   \n",
       "1921                            1966  ...   \n",
       "\n",
       "      Neighbors_NumberOfNeighbors_Adjacent  Neighbors_PercentTouching_5  \\\n",
       "0                                      0.0                    14.159292   \n",
       "1                                      1.0                    48.543689   \n",
       "2                                      2.0                    68.720379   \n",
       "3                                      0.0                    16.842105   \n",
       "4                                      0.0                    10.666667   \n",
       "...                                    ...                          ...   \n",
       "1917                                   0.0                     0.000000   \n",
       "1918                                   1.0                    58.035714   \n",
       "1919                                   2.0                    52.450980   \n",
       "1920                                   1.0                    44.347826   \n",
       "1921                                   1.0                    36.516854   \n",
       "\n",
       "      Neighbors_PercentTouching_Adjacent  Neighbors_SecondClosestDistance_5  \\\n",
       "0                               0.000000                         121.732306   \n",
       "1                              39.805825                          71.723148   \n",
       "2                              49.763033                          60.608189   \n",
       "3                               0.000000                          44.316738   \n",
       "4                               0.000000                         104.233161   \n",
       "...                                  ...                                ...   \n",
       "1917                            0.000000                         118.057911   \n",
       "1918                           48.214286                          74.524847   \n",
       "1919                           34.803922                          41.370820   \n",
       "1920                           35.652174                         161.813879   \n",
       "1921                           26.404494                          49.973304   \n",
       "\n",
       "      Neighbors_SecondClosestDistance_Adjacent  \\\n",
       "0                                   121.732306   \n",
       "1                                    71.723148   \n",
       "2                                    60.608189   \n",
       "3                                    44.316738   \n",
       "4                                   104.233161   \n",
       "...                                        ...   \n",
       "1917                                118.057911   \n",
       "1918                                 74.524847   \n",
       "1919                                 41.370820   \n",
       "1920                                161.813879   \n",
       "1921                                 49.973304   \n",
       "\n",
       "      Neighbors_SecondClosestObjectNumber_5  \\\n",
       "0                                        25   \n",
       "1                                        15   \n",
       "2                                         6   \n",
       "3                                        21   \n",
       "4                                        25   \n",
       "...                                     ...   \n",
       "1917                                    316   \n",
       "1918                                    307   \n",
       "1919                                    318   \n",
       "1920                                    312   \n",
       "1921                                    319   \n",
       "\n",
       "      Neighbors_SecondClosestObjectNumber_Adjacent  Number_Object_Number  \\\n",
       "0                                               25                     1   \n",
       "1                                               15                     2   \n",
       "2                                                6                     3   \n",
       "3                                               21                     4   \n",
       "4                                               25                     5   \n",
       "...                                            ...                   ...   \n",
       "1917                                           316                   324   \n",
       "1918                                           307                   325   \n",
       "1919                                           318                   326   \n",
       "1920                                           312                   327   \n",
       "1921                                           319                   328   \n",
       "\n",
       "      Parent_FilteredNuclei  Parent_Nuclei  \n",
       "0                         1              3  \n",
       "1                         2              5  \n",
       "2                         3              6  \n",
       "3                         4              7  \n",
       "4                         5              8  \n",
       "...                     ...            ...  \n",
       "1917                    324            328  \n",
       "1918                    325            329  \n",
       "1919                    326            330  \n",
       "1920                    327            331  \n",
       "1921                    328            332  \n",
       "\n",
       "[1922 rows x 50 columns]"
      ]
     },
     "execution_count": 3,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "test = pd.read_csv('./seg_test/MPFeat_SYTO_.csv')\n",
    "test"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "id": "7d43ea4b",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['ImageNumber',\n",
       " 'ObjectNumber',\n",
       " 'AreaShape_Area',\n",
       " 'AreaShape_BoundingBoxArea',\n",
       " 'AreaShape_BoundingBoxMaximum_X',\n",
       " 'AreaShape_BoundingBoxMaximum_Y',\n",
       " 'AreaShape_BoundingBoxMinimum_X',\n",
       " 'AreaShape_BoundingBoxMinimum_Y',\n",
       " 'AreaShape_Center_X',\n",
       " 'AreaShape_Center_Y',\n",
       " 'AreaShape_Compactness',\n",
       " 'AreaShape_ConvexArea',\n",
       " 'AreaShape_Eccentricity',\n",
       " 'AreaShape_EquivalentDiameter',\n",
       " 'AreaShape_EulerNumber',\n",
       " 'AreaShape_Extent',\n",
       " 'AreaShape_FormFactor',\n",
       " 'AreaShape_MajorAxisLength',\n",
       " 'AreaShape_MaxFeretDiameter',\n",
       " 'AreaShape_MaximumRadius',\n",
       " 'AreaShape_MeanRadius',\n",
       " 'AreaShape_MedianRadius',\n",
       " 'AreaShape_MinFeretDiameter',\n",
       " 'AreaShape_MinorAxisLength',\n",
       " 'AreaShape_Orientation',\n",
       " 'AreaShape_Perimeter',\n",
       " 'AreaShape_Solidity',\n",
       " 'Location_Center_X',\n",
       " 'Location_Center_Y',\n",
       " 'Location_Center_Z',\n",
       " 'Neighbors_AngleBetweenNeighbors_5',\n",
       " 'Neighbors_AngleBetweenNeighbors_Adjacent',\n",
       " 'Neighbors_FirstClosestDistance_5',\n",
       " 'Neighbors_FirstClosestDistance_Adjacent',\n",
       " 'Neighbors_FirstClosestObjectNumber_5',\n",
       " 'Neighbors_FirstClosestObjectNumber_Adjacent',\n",
       " 'Neighbors_NumberOfNeighbors_5',\n",
       " 'Neighbors_NumberOfNeighbors_Adjacent',\n",
       " 'Neighbors_PercentTouching_5',\n",
       " 'Neighbors_PercentTouching_Adjacent',\n",
       " 'Neighbors_SecondClosestDistance_5',\n",
       " 'Neighbors_SecondClosestDistance_Adjacent',\n",
       " 'Neighbors_SecondClosestObjectNumber_5',\n",
       " 'Neighbors_SecondClosestObjectNumber_Adjacent',\n",
       " 'Number_Object_Number']"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "cols = [value for value in test.columns if value in cp.columns]\n",
    "cols"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "id": "aab98701",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "False"
      ]
     },
     "execution_count": 11,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "cp_array = cp[cols[1:]].values\n",
    "test_array = test[cols[1:]].values\n",
    "np.array_equal(cp_array[1:], test_array[1:])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "id": "fafa1f0e",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "True"
      ]
     },
     "execution_count": 13,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "\n",
    "np.array_equal(cp['AreaShape_Center_Y'].values, test['AreaShape_Center_Y'].values)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "id": "9d609642",
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "array([[1.000e+00, 6.300e+02, 7.840e+02, ..., 2.500e+01, 2.500e+01,\n",
       "        1.000e+00],\n",
       "       [2.000e+00, 5.290e+02, 7.280e+02, ..., 1.500e+01, 1.500e+01,\n",
       "        2.000e+00],\n",
       "       [3.000e+00, 9.960e+02, 2.220e+03, ..., 6.000e+00, 6.000e+00,\n",
       "        3.000e+00],\n",
       "       ...,\n",
       "       [3.260e+02, 9.990e+02, 2.400e+03, ..., 3.180e+02, 3.180e+02,\n",
       "        3.260e+02],\n",
       "       [3.270e+02, 6.280e+02, 8.680e+02, ..., 3.120e+02, 3.120e+02,\n",
       "        3.270e+02],\n",
       "       [3.280e+02, 1.044e+03, 1.554e+03, ..., 3.190e+02, 3.190e+02,\n",
       "        3.280e+02]])"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "test_array"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "650397b3",
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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