{ "cells": [ { "cell_type": "markdown", "id": "a03db044", "metadata": {}, "source": [ "## Take merged tif files as input, perform background subtract, normalize, maxproject for CP \n", "## Take merged tif files as input, perform Matching pursuit" ] }, { "cell_type": "code", "execution_count": 12, "id": "7e4529cf", "metadata": {}, "outputs": [], "source": [ "import matplotlib.pyplot as plt\n", "import matplotlib.patches as patches\n", "from pathlib import Path\n", "import numpy as np\n", "import os\n", "import sys\n", "import glob\n", "import pandas as pd\n", "import xml.etree.ElementTree as et\n", "\n", "import datetime\n", "from imageio import volread as imread\n", "import tifffile\n", "#from pystackreg import StackReg\n", "from skimage.filters import threshold_otsu\n", "\n", "import seaborn as sns\n", "#from pystackreg.util import to_uint16" ] }, { "cell_type": "code", "execution_count": 13, "id": "33e2bc04", "metadata": {}, "outputs": [ { "data": { "text/plain": [ "'/mnt/disks/store/101222_D10_Coverslip1_Processed'" ] }, "execution_count": 13, "metadata": {}, "output_type": "execute_result" } ], "source": [ "os.getcwd()" ] }, { "cell_type": "code", "execution_count": 14, "id": "cb4e4c8b", "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "rm: cannot remove 'merged/*': No such file or directory\n", "rm: cannot remove 'mp_score/*': No such file or directory\n", "rm: cannot remove 'mp_score_max/*': No such file or directory\n", "rm: cannot remove 'max_clean/*': No such file or directory\n" ] } ], "source": [ "dirs_to_remove = ['merged','mp_score','mp_score_max','max_clean']\n", "for dir_ in dirs_to_remove:\n", " cmd = f'rm {dir_}/*'\n", " ! {cmd}" ] }, { "cell_type": "code", "execution_count": 15, "id": "db0df0ec", "metadata": {}, "outputs": [], "source": [ "# define input directory\n", "DATA_DIR = '101222_D10_Coverslip1_Processed'\n", "\n", "SOURCE = f'gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/{DATA_DIR}/'\n", "IN_DIR = 'merged'\n", "MP_DIR = 'mp_score' # output directory to save \n", "MP_MAX_DIR = 'mp_score_max'\n", "CP_DIR = 'max_clean'\n", "\n", "Z = 10\n", "final_ch = 38\n" ] }, { "cell_type": "code", "execution_count": 16, "id": "52217f03", "metadata": {}, "outputs": [ { "data": { "text/html": [ "
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channel_numbercycle_numbermarker_nameFilterexcitation_wavelengthemission_wavelengthBandwidthch_indexSplit_Num
010DNA_0DAPI4054454600
120Blank_488_0GFP4885213811
230Blank_561_0RFP5615944322
340Blank_637_0Cy56376987733
451DNA_1DAPI4054454604
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" ], "text/plain": [ " channel_number cycle_number marker_name Filter excitation_wavelength \\\n", "0 1 0 DNA_0 DAPI 405 \n", "1 2 0 Blank_488_0 GFP 488 \n", "2 3 0 Blank_561_0 RFP 561 \n", "3 4 0 Blank_637_0 Cy5 637 \n", "4 5 1 DNA_1 DAPI 405 \n", "\n", " emission_wavelength Bandwidth ch_index Split_Num \n", "0 445 46 0 0 \n", "1 521 38 1 1 \n", "2 594 43 2 2 \n", "3 698 77 3 3 \n", "4 445 46 0 4 " ] }, "execution_count": 16, "metadata": {}, "output_type": "execute_result" }, { "data": { "image/png": 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\n", 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" ] }, "metadata": { "needs_background": "light" }, "output_type": "display_data" } ], "source": [ "# define inputs\n", "IN_DIR = 'merged'\n", "OUT_DIR = 'clean_max'\n", "META_DIR = 'metadata'\n", "\n", "# load metadata - load full codebook as well\n", "full_codebook = pd.read_csv(f'../{META_DIR}/full_codebook.csv',sep=',', index_col=0) # this is \"legal\" codebook\n", "Procode_gRNA = pd.read_csv(f'../{META_DIR}/PROCODE_gRNA.csv',sep=',')\n", "legal_codes = sorted(list(set(Procode_gRNA['ProCode ID'].to_list())))\n", "codebook = full_codebook[legal_codes]\n", "#AllProcodes = pd.read_csv('AllProcodes.csv', sep='.')\n", "sns.heatmap(codebook, linewidths = 0.3)\n", "markers = pd.read_csv(f'../{META_DIR}/markers.csv')\n", "markers.head()\n" ] }, { "cell_type": "code", "execution_count": 17, "id": "0ff7d888", "metadata": {}, "outputs": [], "source": [ "def BackgroundSubtract2D(img, markers): # 112222 final version?\n", " if img.dtype != np.float32:\n", " img = img.astype(np.float32)\n", " print(\"Channel Size \", img.shape[0])\n", " \n", " ## Background Subtraction ## ALL CHANNELS except DNA channels\n", " for ch in range(4, img.shape[0]):\n", " if markers.loc[ch,'excitation_wavelength'] == 488:\n", " img[ch,...] = img[ch,...] - img[1,...] # subtract background \n", " elif markers.loc[ch,'excitation_wavelength'] == 561:\n", " img[ch,...] = img[ch,...] - img[2,...] # subtract background \n", " elif markers.loc[ch,'excitation_wavelength'] == 637: \n", " img[ch,...] = img[ch,...] - img[3,...] # subtract background \n", " elif markers.loc[ch,'excitation_wavelength'] == 514: # for SYTO channel\n", " img[ch,...] = img[ch,...] - img[1,...] # subtract background \n", " img[img<0] = 0 # clip negatives \n", " return img\n", "\n", "# img has to be CZYX \n", "def QuantileNormalize(img, MIN, MAX): \n", " # include assert error checking for img shape = CZYX this function only works in CZYX or CYX format.\n", " # calculate normalization factors\n", " img_min = np.quantile(img,MIN,tuple(range(1,len(img.shape))),keepdims=True) # most of each channel is probably background\n", " img_max = np.quantile(img,MAX,tuple(range(1,len(img.shape))),keepdims=True) \n", " img = (img.astype(np.float32) - img_min) / (img_max - img_min)\n", " img = img.clip(0,1) # clip negatives \n", " img = img.astype(np.float32)\n", " return img # bcg subtracted, epitope channel selected, median filtered and min/max normalized " ] }, { "cell_type": "code", "execution_count": 18, "id": "b3722aa0", "metadata": {}, "outputs": [], "source": [ "def prepare_MPinput(img, codebook, markers): # 112222 final version?\n", " from skimage.filters import median\n", " from skimage.morphology import disk\n", "\n", " if img.dtype != np.float32:\n", " img = img.astype(np.float32)\n", " \n", " if img.shape[0] != len(markers.index.tolist()):\n", " img = img.transpose(1,0,2,3)\n", " assert img.shape[0] == len(markers.index.tolist()), 'image input should be transposed to CZYX'\n", " print(\"Channel Size \", img.shape[0])\n", " \n", " ## Background Subtraction ## ALL CHANNELS except DNA channels\n", " for ch in range(4, img.shape[0]):\n", " if markers.loc[ch,'excitation_wavelength'] == 488:\n", " img[ch,...] = img[ch,...] - img[1,...] # subtract background \n", " elif markers.loc[ch,'excitation_wavelength'] == 561:\n", " img[ch,...] = img[ch,...] - img[2,...] # subtract background \n", " elif markers.loc[ch,'excitation_wavelength'] == 637: \n", " img[ch,...] = img[ch,...] - img[3,...] # subtract background \n", " elif markers.loc[ch,'excitation_wavelength'] == 514: # for SYTO channel\n", " img[ch,...] = img[ch,...] - img[1,...] # subtract background \n", " img[img<0] = 0 # clip negatives \n", " \n", " ### THIS IS IMPORTANT -- do median filter of only EPITOPE channels.\n", " img = img[markers['marker_name'].isin(codebook.index)]\n", " \n", " # median filter - ####### DO IT before calculating quantiles\n", " # median filter of only epitope channels !!!! \n", " _img = np.zeros(np.shape(img), dtype = np.float32)\n", " for C in range(img.shape[0]):\n", " for Z in range(img.shape[1]):\n", " _img[C,Z,...] = median(img[C,Z,...], disk(1))\n", "\n", " # calculate normalization factors\n", " img_min = np.quantile(_img,0.75,(1,2,3),keepdims=True) # most of each channel is probably background\n", " img_max = np.quantile(_img,0.999,(1,2,3),keepdims=True) \n", " img = (img.astype(np.float32) - img_min) / (img_max - img_min)\n", " img = img.clip(0,1) # clip negatives \n", " return img # bcg subtracted, epitope channel selected, median filtered and min/max normalized \n", "\n", "\n", "# approximately solve min_z ||zA-x||^2_2 st ||z||_0 <= max_iters\n", "def matching_pursuit(x, A, max_iters, thr=1):\n", " # this is necessary if doing more than one iteration, for the residuals update to work\n", " from skimage.filters import threshold_otsu\n", " A = A / np.linalg.norm(A,axis=1)[:,None]\n", " z = np.zeros((A.shape[0],*x.shape[1:]))\n", " x = x.copy() # initialize \"residuals\" to the image itself\n", " # mask for whether each pixel has converged or not; we already know background's zero\n", " active_set = np.ones(x.shape[1:],dtype=bool)\n", " x_norm = np.linalg.norm(x,axis=0,ord=2)\n", "\n", " # one approach: pick it using the otsu threshold, as estimate of noise level\n", " max_norm = threshold_otsu(x_norm)\n", "# max_norm = [threshold_otsu(x_norm[k]) for k in range(x_norm.shape[0])]\n", "# max_norm = np.array(max_norm)[:,None,None]\n", " max_norm *= thr # hack; otsu just not great. see 'enhance neurites' in CellProfiler?\n", " active_set[x_norm <= max_norm] = False\n", " for t in range(max_iters):\n", " # project dictionary on residual image\n", " Ax = A @ x[:,active_set]\n", " # pick index with max projection\n", " k_max = Ax.argmax(0)\n", " # set it to active\n", " z[k_max,active_set] = Ax[k_max,range(len(k_max))]\n", " # subtract off contribution\n", " x[:,active_set] -= A[k_max].T * z[k_max,active_set]\n", " # mark pixels with sufficiently small residual norm as done\n", " x_norm = np.linalg.norm(x,axis=0,ord=2)\n", " active_set[x_norm NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F000_mp_score.tif\n", "gsutil cp mp_score/F000_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F000_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 114.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F000_mp_score_max.tif\n", "gsutil cp mp_score_max/F000_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F000_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F001.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F001.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 72.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F001_max_clean.tif\n", "gsutil cp max_clean/F001_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F001_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F001_mp_score.tif\n", "gsutil cp mp_score/F001_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F001_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 140.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F001_mp_score_max.tif\n", "gsutil cp mp_score_max/F001_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F001_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F002.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F002.tif...\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "/ [1 files][ 2.9 GiB/ 2.9 GiB] 69.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F002_max_clean.tif\n", "gsutil cp max_clean/F002_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F002_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F002_mp_score.tif\n", "gsutil cp mp_score/F002_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F002_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 221.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F002_mp_score_max.tif\n", "gsutil cp mp_score_max/F002_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F002_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F003.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F003.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 63.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F003_max_clean.tif\n", "gsutil cp max_clean/F003_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F003_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F003_mp_score.tif\n", "gsutil cp mp_score/F003_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F003_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 170.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F003_mp_score_max.tif\n", "gsutil cp mp_score_max/F003_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F003_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F004.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F004.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 70.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F004_max_clean.tif\n", "gsutil cp max_clean/F004_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F004_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F004_mp_score.tif\n", "gsutil cp mp_score/F004_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F004_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 176.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F004_mp_score_max.tif\n", "gsutil cp mp_score_max/F004_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F004_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F005.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F005.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 71.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F005_max_clean.tif\n", "gsutil cp max_clean/F005_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F005_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F005_mp_score.tif\n", "gsutil cp mp_score/F005_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F005_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 184.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F005_mp_score_max.tif\n", "gsutil cp mp_score_max/F005_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F005_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F006.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F006.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 46.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F006_max_clean.tif\n", "gsutil cp max_clean/F006_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F006_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F006_mp_score.tif\n", "gsutil cp mp_score/F006_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F006_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 183.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F006_mp_score_max.tif\n", "gsutil cp mp_score_max/F006_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F006_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F007.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F007.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 75.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F007_max_clean.tif\n", "gsutil cp max_clean/F007_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F007_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F007_mp_score.tif\n", "gsutil cp mp_score/F007_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F007_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 214.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F007_mp_score_max.tif\n", "gsutil cp mp_score_max/F007_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F007_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F008.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F008.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 70.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F008_max_clean.tif\n", "gsutil cp max_clean/F008_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F008_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F008_mp_score.tif\n", "gsutil cp mp_score/F008_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F008_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 188.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F008_mp_score_max.tif\n", "gsutil cp mp_score_max/F008_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F008_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F009.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F009.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 67.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F009_max_clean.tif\n", "gsutil cp max_clean/F009_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F009_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F009_mp_score.tif\n", "gsutil cp mp_score/F009_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F009_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 161.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F009_mp_score_max.tif\n", "gsutil cp mp_score_max/F009_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F009_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['010', '011', '012', '013', '014', '015', '016', '017', '018', '019']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F010.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F010.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 73.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F010_max_clean.tif\n", "gsutil cp max_clean/F010_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F010_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F010_mp_score.tif\n", "gsutil cp mp_score/F010_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F010_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][ 3.3 GiB/ 3.3 GiB] 209.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F010_mp_score_max.tif\n", "gsutil cp mp_score_max/F010_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F010_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F011.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F011.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 77.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F011_max_clean.tif\n", "gsutil cp max_clean/F011_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F011_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F011_mp_score.tif\n", "gsutil cp mp_score/F011_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F011_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 171.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F011_mp_score_max.tif\n", "gsutil cp mp_score_max/F011_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F011_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F012.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F012.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 74.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F012_max_clean.tif\n", "gsutil cp max_clean/F012_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F012_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F012_mp_score.tif\n", "gsutil cp mp_score/F012_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F012_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 175.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F012_mp_score_max.tif\n", "gsutil cp mp_score_max/F012_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F012_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F013.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F013.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 8.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F013_max_clean.tif\n", "gsutil cp max_clean/F013_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F013_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F013_mp_score.tif\n", "gsutil cp mp_score/F013_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F013_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 221.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F013_mp_score_max.tif\n", "gsutil cp mp_score_max/F013_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F013_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F014.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F014.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 76.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F014_max_clean.tif\n", "gsutil cp max_clean/F014_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F014_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F014_mp_score.tif\n", "gsutil cp mp_score/F014_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F014_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 177.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F014_mp_score_max.tif\n", "gsutil cp mp_score_max/F014_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F014_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F015.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F015.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 69.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F015_max_clean.tif\n", "gsutil cp max_clean/F015_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F015_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F015_mp_score.tif\n", "gsutil cp mp_score/F015_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F015_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 181.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F015_mp_score_max.tif\n", "gsutil cp mp_score_max/F015_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F015_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F016.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F016.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 75.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F016_max_clean.tif\n", "gsutil cp max_clean/F016_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F016_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F016_mp_score.tif\n", "gsutil cp mp_score/F016_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F016_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 184.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F016_mp_score_max.tif\n", "gsutil cp mp_score_max/F016_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F016_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F017.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F017.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 75.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F017_max_clean.tif\n", "gsutil cp max_clean/F017_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F017_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F017_mp_score.tif\n", "gsutil cp mp_score/F017_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F017_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 218.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F017_mp_score_max.tif\n", "gsutil cp mp_score_max/F017_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F017_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F018.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F018.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 70.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F018_max_clean.tif\n", "gsutil cp max_clean/F018_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F018_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F018_mp_score.tif\n", "gsutil cp mp_score/F018_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F018_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 223.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F018_mp_score_max.tif\n", "gsutil cp mp_score_max/F018_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F018_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F019.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F019.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 70.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F019_max_clean.tif\n", "gsutil cp max_clean/F019_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F019_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F019_mp_score.tif\n", "gsutil cp mp_score/F019_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F019_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 167.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F019_mp_score_max.tif\n", "gsutil cp mp_score_max/F019_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F019_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['020', '021', '022', '023', '024', '025', '026', '027', '028', '029']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F020.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F020.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 72.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F020_max_clean.tif\n", "gsutil cp max_clean/F020_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F020_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F020_mp_score.tif\n", "gsutil cp mp_score/F020_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F020_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 168.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F020_mp_score_max.tif\n", "gsutil cp mp_score_max/F020_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F020_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F021.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F021.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 69.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F021_max_clean.tif\n", "gsutil cp max_clean/F021_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F021_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F021_mp_score.tif\n", "gsutil cp mp_score/F021_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F021_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 180.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F021_mp_score_max.tif\n", "gsutil cp mp_score_max/F021_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F021_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F022.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F022.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 67.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F022_max_clean.tif\n", "gsutil cp max_clean/F022_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F022_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F022_mp_score.tif\n", "gsutil cp mp_score/F022_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F022_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 181.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F022_mp_score_max.tif\n", "gsutil cp mp_score_max/F022_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F022_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F023.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F023.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 72.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F023_max_clean.tif\n", "gsutil cp max_clean/F023_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F023_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F023_mp_score.tif\n", "gsutil cp mp_score/F023_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F023_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 193.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F023_mp_score_max.tif\n", "gsutil cp mp_score_max/F023_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F023_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F024.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F024.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 68.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F024_max_clean.tif\n", "gsutil cp max_clean/F024_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F024_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F024_mp_score.tif\n", "gsutil cp mp_score/F024_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F024_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 196.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F024_mp_score_max.tif\n", "gsutil cp mp_score_max/F024_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F024_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F025.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F025.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 80.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F025_max_clean.tif\n", "gsutil cp max_clean/F025_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F025_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F025_mp_score.tif\n", "gsutil cp mp_score/F025_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F025_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 175.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F025_mp_score_max.tif\n", "gsutil cp mp_score_max/F025_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F025_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F026.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F026.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 73.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F026_max_clean.tif\n", "gsutil cp max_clean/F026_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F026_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F026_mp_score.tif\n", "gsutil cp mp_score/F026_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F026_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 189.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F026_mp_score_max.tif\n", "gsutil cp mp_score_max/F026_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F026_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F027.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F027.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 70.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F027_max_clean.tif\n", "gsutil cp max_clean/F027_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F027_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F027_mp_score.tif\n", "gsutil cp mp_score/F027_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F027_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][ 3.3 GiB/ 3.3 GiB] 224.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F027_mp_score_max.tif\n", "gsutil cp mp_score_max/F027_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F027_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F028.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F028.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 61.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F028_max_clean.tif\n", "gsutil cp max_clean/F028_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F028_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F028_mp_score.tif\n", "gsutil cp mp_score/F028_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F028_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 149.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F028_mp_score_max.tif\n", "gsutil cp mp_score_max/F028_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F028_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F029.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F029.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 50.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F029_max_clean.tif\n", "gsutil cp max_clean/F029_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F029_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F029_mp_score.tif\n", "gsutil cp mp_score/F029_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F029_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 214.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F029_mp_score_max.tif\n", "gsutil cp mp_score_max/F029_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F029_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['030', '031', '032', '033', '034', '035', '036', '037', '038', '039']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F030.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F030.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 69.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F030_max_clean.tif\n", "gsutil cp max_clean/F030_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F030_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F030_mp_score.tif\n", "gsutil cp mp_score/F030_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F030_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 169.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F030_mp_score_max.tif\n", "gsutil cp mp_score_max/F030_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F030_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F031.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F031.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 72.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F031_max_clean.tif\n", "gsutil cp max_clean/F031_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F031_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F031_mp_score.tif\n", "gsutil cp mp_score/F031_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F031_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 219.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F031_mp_score_max.tif\n", "gsutil cp mp_score_max/F031_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F031_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F032.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F032.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 77.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F032_max_clean.tif\n", "gsutil cp max_clean/F032_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F032_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F032_mp_score.tif\n", "gsutil cp mp_score/F032_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F032_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 186.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F032_mp_score_max.tif\n", "gsutil cp mp_score_max/F032_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F032_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F033.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F033.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 47.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F033_max_clean.tif\n", "gsutil cp max_clean/F033_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F033_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F033_mp_score.tif\n", "gsutil cp mp_score/F033_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F033_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 176.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F033_mp_score_max.tif\n", "gsutil cp mp_score_max/F033_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F033_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F034.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F034.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 74.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F034_max_clean.tif\n", "gsutil cp max_clean/F034_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F034_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F034_mp_score.tif\n", "gsutil cp mp_score/F034_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F034_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 196.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F034_mp_score_max.tif\n", "gsutil cp mp_score_max/F034_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F034_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F035.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F035.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 72.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F035_max_clean.tif\n", "gsutil cp max_clean/F035_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F035_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F035_mp_score.tif\n", "gsutil cp mp_score/F035_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F035_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 184.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F035_mp_score_max.tif\n", "gsutil cp mp_score_max/F035_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F035_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F036.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F036.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 78.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F036_max_clean.tif\n", "gsutil cp max_clean/F036_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F036_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F036_mp_score.tif\n", "gsutil cp mp_score/F036_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F036_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 178.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F036_mp_score_max.tif\n", "gsutil cp mp_score_max/F036_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F036_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F037.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F037.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 71.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F037_max_clean.tif\n", "gsutil cp max_clean/F037_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F037_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F037_mp_score.tif\n", "gsutil cp mp_score/F037_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F037_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 176.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F037_mp_score_max.tif\n", "gsutil cp mp_score_max/F037_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F037_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F038.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F038.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 72.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F038_max_clean.tif\n", "gsutil cp max_clean/F038_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F038_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F038_mp_score.tif\n", "gsutil cp mp_score/F038_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F038_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 169.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F038_mp_score_max.tif\n", "gsutil cp mp_score_max/F038_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F038_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F039.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F039.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 76.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F039_max_clean.tif\n", "gsutil cp max_clean/F039_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F039_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F039_mp_score.tif\n", "gsutil cp mp_score/F039_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F039_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 218.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F039_mp_score_max.tif\n", "gsutil cp mp_score_max/F039_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F039_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['040', '041', '042', '043', '044', '045', '046', '047', '048', '049']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F040.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F040.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 74.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F040_max_clean.tif\n", "gsutil cp max_clean/F040_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F040_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F040_mp_score.tif\n", "gsutil cp mp_score/F040_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F040_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 219.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F040_mp_score_max.tif\n", "gsutil cp mp_score_max/F040_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F040_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F041.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F041.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 71.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F041_max_clean.tif\n", "gsutil cp max_clean/F041_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F041_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F041_mp_score.tif\n", "gsutil cp mp_score/F041_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F041_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 214.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F041_mp_score_max.tif\n", "gsutil cp mp_score_max/F041_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F041_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F042.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F042.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 56.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F042_max_clean.tif\n", "gsutil cp max_clean/F042_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F042_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F042_mp_score.tif\n", "gsutil cp mp_score/F042_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F042_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 202.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F042_mp_score_max.tif\n", "gsutil cp mp_score_max/F042_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F042_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F043.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F043.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 73.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F043_max_clean.tif\n", "gsutil cp max_clean/F043_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F043_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F043_mp_score.tif\n", "gsutil cp mp_score/F043_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F043_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 220.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F043_mp_score_max.tif\n", "gsutil cp mp_score_max/F043_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F043_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F044.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F044.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 65.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F044_max_clean.tif\n", "gsutil cp max_clean/F044_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F044_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F044_mp_score.tif\n", "gsutil cp mp_score/F044_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F044_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 174.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F044_mp_score_max.tif\n", "gsutil cp mp_score_max/F044_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F044_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F045.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F045.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 66.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F045_max_clean.tif\n", "gsutil cp max_clean/F045_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F045_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F045_mp_score.tif\n", "gsutil cp mp_score/F045_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F045_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 182.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F045_mp_score_max.tif\n", "gsutil cp mp_score_max/F045_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F045_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F046.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F046.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 70.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F046_max_clean.tif\n", "gsutil cp max_clean/F046_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F046_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F046_mp_score.tif\n", "gsutil cp mp_score/F046_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F046_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 163.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F046_mp_score_max.tif\n", "gsutil cp mp_score_max/F046_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F046_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F047.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F047.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 68.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F047_max_clean.tif\n", "gsutil cp max_clean/F047_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F047_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F047_mp_score.tif\n", "gsutil cp mp_score/F047_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F047_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 225.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F047_mp_score_max.tif\n", "gsutil cp mp_score_max/F047_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F047_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F048.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F048.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 71.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F048_max_clean.tif\n", "gsutil cp max_clean/F048_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F048_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F048_mp_score.tif\n", "gsutil cp mp_score/F048_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F048_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 188.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F048_mp_score_max.tif\n", "gsutil cp mp_score_max/F048_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F048_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F049.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F049.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 74.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F049_max_clean.tif\n", "gsutil cp max_clean/F049_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F049_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F049_mp_score.tif\n", "gsutil cp mp_score/F049_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F049_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 179.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F049_mp_score_max.tif\n", "gsutil cp mp_score_max/F049_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F049_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['050', '051', '052', '053', '054', '055', '056', '057', '058', '059']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F050.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F050.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 63.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F050_max_clean.tif\n", "gsutil cp max_clean/F050_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F050_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F050_mp_score.tif\n", "gsutil cp mp_score/F050_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F050_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 180.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F050_mp_score_max.tif\n", "gsutil cp mp_score_max/F050_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F050_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F051.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F051.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 48.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F051_max_clean.tif\n", "gsutil cp max_clean/F051_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F051_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F051_mp_score.tif\n", "gsutil cp mp_score/F051_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F051_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 185.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F051_mp_score_max.tif\n", "gsutil cp mp_score_max/F051_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F051_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F052.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F052.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 74.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F052_max_clean.tif\n", "gsutil cp max_clean/F052_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F052_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F052_mp_score.tif\n", "gsutil cp mp_score/F052_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F052_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 173.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F052_mp_score_max.tif\n", "gsutil cp mp_score_max/F052_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F052_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F053.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F053.tif...\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][ 2.9 GiB/ 2.9 GiB] 69.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F053_max_clean.tif\n", "gsutil cp max_clean/F053_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F053_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F053_mp_score.tif\n", "gsutil cp mp_score/F053_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F053_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 182.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F053_mp_score_max.tif\n", "gsutil cp mp_score_max/F053_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F053_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F054.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F054.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 72.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F054_max_clean.tif\n", "gsutil cp max_clean/F054_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F054_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F054_mp_score.tif\n", "gsutil cp mp_score/F054_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F054_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 179.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F054_mp_score_max.tif\n", "gsutil cp mp_score_max/F054_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F054_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F055.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F055.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 70.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F055_max_clean.tif\n", "gsutil cp max_clean/F055_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F055_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F055_mp_score.tif\n", "gsutil cp mp_score/F055_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F055_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 204.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F055_mp_score_max.tif\n", "gsutil cp mp_score_max/F055_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F055_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F056.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F056.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 81.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F056_max_clean.tif\n", "gsutil cp max_clean/F056_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F056_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F056_mp_score.tif\n", "gsutil cp mp_score/F056_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F056_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 176.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F056_mp_score_max.tif\n", "gsutil cp mp_score_max/F056_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F056_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F057.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F057.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 68.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F057_max_clean.tif\n", "gsutil cp max_clean/F057_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F057_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F057_mp_score.tif\n", "gsutil cp mp_score/F057_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F057_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 103.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F057_mp_score_max.tif\n", "gsutil cp mp_score_max/F057_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F057_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F058.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F058.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 66.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F058_max_clean.tif\n", "gsutil cp max_clean/F058_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F058_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F058_mp_score.tif\n", "gsutil cp mp_score/F058_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F058_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 154.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F058_mp_score_max.tif\n", "gsutil cp mp_score_max/F058_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F058_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F059.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F059.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 68.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F059_max_clean.tif\n", "gsutil cp max_clean/F059_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F059_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F059_mp_score.tif\n", "gsutil cp mp_score/F059_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F059_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 179.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F059_mp_score_max.tif\n", "gsutil cp mp_score_max/F059_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F059_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['060', '061', '062', '063', '064', '065', '066', '067', '068', '069']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F060.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F060.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 65.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F060_max_clean.tif\n", "gsutil cp max_clean/F060_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F060_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F060_mp_score.tif\n", "gsutil cp mp_score/F060_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F060_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 212.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F060_mp_score_max.tif\n", "gsutil cp mp_score_max/F060_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F060_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F061.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F061.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 68.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F061_max_clean.tif\n", "gsutil cp max_clean/F061_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F061_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F061_mp_score.tif\n", "gsutil cp mp_score/F061_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F061_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][ 3.3 GiB/ 3.3 GiB] 175.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F061_mp_score_max.tif\n", "gsutil cp mp_score_max/F061_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F061_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F062.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F062.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 72.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F062_max_clean.tif\n", "gsutil cp max_clean/F062_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F062_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F062_mp_score.tif\n", "gsutil cp mp_score/F062_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F062_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 183.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F062_mp_score_max.tif\n", "gsutil cp mp_score_max/F062_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F062_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F063.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F063.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 66.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F063_max_clean.tif\n", "gsutil cp max_clean/F063_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F063_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F063_mp_score.tif\n", "gsutil cp mp_score/F063_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F063_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 122.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F063_mp_score_max.tif\n", "gsutil cp mp_score_max/F063_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F063_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F064.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F064.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 67.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F064_max_clean.tif\n", "gsutil cp max_clean/F064_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F064_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F064_mp_score.tif\n", "gsutil cp mp_score/F064_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F064_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 218.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F064_mp_score_max.tif\n", "gsutil cp mp_score_max/F064_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F064_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F065.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F065.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 68.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F065_max_clean.tif\n", "gsutil cp max_clean/F065_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F065_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F065_mp_score.tif\n", "gsutil cp mp_score/F065_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F065_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 178.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F065_mp_score_max.tif\n", "gsutil cp mp_score_max/F065_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F065_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F066.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F066.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 71.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F066_max_clean.tif\n", "gsutil cp max_clean/F066_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F066_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F066_mp_score.tif\n", "gsutil cp mp_score/F066_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F066_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 180.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F066_mp_score_max.tif\n", "gsutil cp mp_score_max/F066_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F066_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F067.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F067.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 70.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F067_max_clean.tif\n", "gsutil cp max_clean/F067_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F067_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F067_mp_score.tif\n", "gsutil cp mp_score/F067_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F067_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 100.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F067_mp_score_max.tif\n", "gsutil cp mp_score_max/F067_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F067_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F068.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F068.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 65.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F068_max_clean.tif\n", "gsutil cp max_clean/F068_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F068_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F068_mp_score.tif\n", "gsutil cp mp_score/F068_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F068_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 171.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F068_mp_score_max.tif\n", "gsutil cp mp_score_max/F068_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F068_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F069.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F069.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 71.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F069_max_clean.tif\n", "gsutil cp max_clean/F069_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F069_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F069_mp_score.tif\n", "gsutil cp mp_score/F069_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F069_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 179.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F069_mp_score_max.tif\n", "gsutil cp mp_score_max/F069_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F069_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['070', '071', '072', '073', '074', '075', '076', '077', '078', '079']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F070.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F070.tif...\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "/ [1 files][ 2.9 GiB/ 2.9 GiB] 69.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F070_max_clean.tif\n", "gsutil cp max_clean/F070_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F070_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F070_mp_score.tif\n", "gsutil cp mp_score/F070_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F070_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 195.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F070_mp_score_max.tif\n", "gsutil cp mp_score_max/F070_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F070_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F071.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F071.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 76.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F071_max_clean.tif\n", "gsutil cp max_clean/F071_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F071_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F071_mp_score.tif\n", "gsutil cp mp_score/F071_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F071_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 137.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F071_mp_score_max.tif\n", "gsutil cp mp_score_max/F071_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F071_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F072.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F072.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 38.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F072_max_clean.tif\n", "gsutil cp max_clean/F072_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F072_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F072_mp_score.tif\n", "gsutil cp mp_score/F072_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F072_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 188.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F072_mp_score_max.tif\n", "gsutil cp mp_score_max/F072_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F072_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F073.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F073.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 69.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F073_max_clean.tif\n", "gsutil cp max_clean/F073_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F073_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F073_mp_score.tif\n", "gsutil cp mp_score/F073_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F073_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 221.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F073_mp_score_max.tif\n", "gsutil cp mp_score_max/F073_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F073_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F074.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F074.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 70.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F074_max_clean.tif\n", "gsutil cp max_clean/F074_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F074_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F074_mp_score.tif\n", "gsutil cp mp_score/F074_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F074_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 180.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F074_mp_score_max.tif\n", "gsutil cp mp_score_max/F074_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F074_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F075.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F075.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 69.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F075_max_clean.tif\n", "gsutil cp max_clean/F075_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F075_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F075_mp_score.tif\n", "gsutil cp mp_score/F075_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F075_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 219.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F075_mp_score_max.tif\n", "gsutil cp mp_score_max/F075_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F075_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F076.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F076.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 69.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F076_max_clean.tif\n", "gsutil cp max_clean/F076_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F076_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F076_mp_score.tif\n", "gsutil cp mp_score/F076_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F076_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 200.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F076_mp_score_max.tif\n", "gsutil cp mp_score_max/F076_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F076_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F077.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F077.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 75.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F077_max_clean.tif\n", "gsutil cp max_clean/F077_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F077_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F077_mp_score.tif\n", "gsutil cp mp_score/F077_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F077_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 95.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F077_mp_score_max.tif\n", "gsutil cp mp_score_max/F077_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F077_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F078.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F078.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 60.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F078_max_clean.tif\n", "gsutil cp max_clean/F078_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F078_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F078_mp_score.tif\n", "gsutil cp mp_score/F078_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F078_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][ 3.3 GiB/ 3.3 GiB] 221.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F078_mp_score_max.tif\n", "gsutil cp mp_score_max/F078_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F078_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F079.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F079.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 36.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F079_max_clean.tif\n", "gsutil cp max_clean/F079_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F079_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F079_mp_score.tif\n", "gsutil cp mp_score/F079_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F079_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 176.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F079_mp_score_max.tif\n", "gsutil cp mp_score_max/F079_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F079_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['080', '081', '082', '083', '084', '085', '086', '087', '088', '089']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F080.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F080.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 69.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F080_max_clean.tif\n", "gsutil cp max_clean/F080_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F080_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F080_mp_score.tif\n", "gsutil cp mp_score/F080_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F080_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 90.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Saving 2D score map... ./mp_score_max/F080_mp_score_max.tif\n", "gsutil cp mp_score_max/F080_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F080_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F081.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F081.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 66.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F081_max_clean.tif\n", "gsutil cp max_clean/F081_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F081_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F081_mp_score.tif\n", "gsutil cp mp_score/F081_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F081_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 220.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F081_mp_score_max.tif\n", "gsutil cp mp_score_max/F081_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F081_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F082.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F082.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 47.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F082_max_clean.tif\n", "gsutil cp max_clean/F082_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F082_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F082_mp_score.tif\n", "gsutil cp mp_score/F082_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F082_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 184.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F082_mp_score_max.tif\n", "gsutil cp mp_score_max/F082_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F082_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F083.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F083.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 70.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F083_max_clean.tif\n", "gsutil cp max_clean/F083_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F083_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F083_mp_score.tif\n", "gsutil cp mp_score/F083_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F083_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 222.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F083_mp_score_max.tif\n", "gsutil cp mp_score_max/F083_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F083_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F084.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F084.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 70.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F084_max_clean.tif\n", "gsutil cp max_clean/F084_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F084_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F084_mp_score.tif\n", "gsutil cp mp_score/F084_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F084_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 189.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F084_mp_score_max.tif\n", "gsutil cp mp_score_max/F084_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F084_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F085.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F085.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 72.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F085_max_clean.tif\n", "gsutil cp max_clean/F085_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F085_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F085_mp_score.tif\n", "gsutil cp mp_score/F085_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F085_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 204.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F085_mp_score_max.tif\n", "gsutil cp mp_score_max/F085_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F085_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F086.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F086.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 41.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F086_max_clean.tif\n", "gsutil cp max_clean/F086_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F086_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F086_mp_score.tif\n", "gsutil cp mp_score/F086_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F086_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 218.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F086_mp_score_max.tif\n", "gsutil cp mp_score_max/F086_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F086_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F087.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F087.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 77.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F087_max_clean.tif\n", "gsutil cp max_clean/F087_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F087_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F087_mp_score.tif\n", "gsutil cp mp_score/F087_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F087_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 213.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F087_mp_score_max.tif\n", "gsutil cp mp_score_max/F087_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F087_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F088.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F088.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 72.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F088_max_clean.tif\n", "gsutil cp max_clean/F088_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F088_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F088_mp_score.tif\n", "gsutil cp mp_score/F088_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F088_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 216.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F088_mp_score_max.tif\n", "gsutil cp mp_score_max/F088_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F088_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F089.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F089.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 74.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F089_max_clean.tif\n", "gsutil cp max_clean/F089_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F089_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F089_mp_score.tif\n", "gsutil cp mp_score/F089_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F089_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 180.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F089_mp_score_max.tif\n", "gsutil cp mp_score_max/F089_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F089_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['090', '091', '092', '093', '094', '095', '096', '097', '098', '099']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F090.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F090.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 30.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F090_max_clean.tif\n", "gsutil cp max_clean/F090_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F090_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F090_mp_score.tif\n", "gsutil cp mp_score/F090_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F090_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 177.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F090_mp_score_max.tif\n", "gsutil cp mp_score_max/F090_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F090_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F091.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F091.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 69.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F091_max_clean.tif\n", "gsutil cp max_clean/F091_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F091_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F091_mp_score.tif\n", "gsutil cp mp_score/F091_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F091_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 178.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F091_mp_score_max.tif\n", "gsutil cp mp_score_max/F091_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F091_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F092.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F092.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 69.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F092_max_clean.tif\n", "gsutil cp max_clean/F092_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F092_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F092_mp_score.tif\n", "gsutil cp mp_score/F092_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F092_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 214.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F092_mp_score_max.tif\n", "gsutil cp mp_score_max/F092_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F092_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F093.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F093.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 75.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F093_max_clean.tif\n", "gsutil cp max_clean/F093_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F093_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F093_mp_score.tif\n", "gsutil cp mp_score/F093_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F093_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 139.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F093_mp_score_max.tif\n", "gsutil cp mp_score_max/F093_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F093_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F094.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F094.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 38.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F094_max_clean.tif\n", "gsutil cp max_clean/F094_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F094_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F094_mp_score.tif\n", "gsutil cp mp_score/F094_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F094_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 173.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F094_mp_score_max.tif\n", "gsutil cp mp_score_max/F094_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F094_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F095.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F095.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 70.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F095_max_clean.tif\n", "gsutil cp max_clean/F095_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F095_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F095_mp_score.tif\n", "gsutil cp mp_score/F095_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F095_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 178.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F095_mp_score_max.tif\n", "gsutil cp mp_score_max/F095_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F095_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F096.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F096.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 70.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F096_max_clean.tif\n", "gsutil cp max_clean/F096_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F096_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F096_mp_score.tif\n", "gsutil cp mp_score/F096_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F096_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 222.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F096_mp_score_max.tif\n", "gsutil cp mp_score_max/F096_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F096_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F097.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F097.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 74.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F097_max_clean.tif\n", "gsutil cp max_clean/F097_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F097_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F097_mp_score.tif\n", "gsutil cp mp_score/F097_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F097_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 96.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F097_mp_score_max.tif\n", "gsutil cp mp_score_max/F097_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F097_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F098.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F098.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 35.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F098_max_clean.tif\n", "gsutil cp max_clean/F098_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F098_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F098_mp_score.tif\n", "gsutil cp mp_score/F098_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F098_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 174.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F098_mp_score_max.tif\n", "gsutil cp mp_score_max/F098_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F098_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F099.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F099.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 31.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F099_max_clean.tif\n", "gsutil cp max_clean/F099_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F099_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F099_mp_score.tif\n", "gsutil cp mp_score/F099_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F099_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 150.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F099_mp_score_max.tif\n", "gsutil cp mp_score_max/F099_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F099_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['100', '101', '102', '103', '104', '105', '106', '107', '108', '109']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F100.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F100.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 68.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F100_max_clean.tif\n", "gsutil cp max_clean/F100_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F100_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F100_mp_score.tif\n", "gsutil cp mp_score/F100_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F100_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 220.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F100_mp_score_max.tif\n", "gsutil cp mp_score_max/F100_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F100_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F101.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F101.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 63.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F101_max_clean.tif\n", "gsutil cp max_clean/F101_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F101_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F101_mp_score.tif\n", "gsutil cp mp_score/F101_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F101_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 179.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F101_mp_score_max.tif\n", "gsutil cp mp_score_max/F101_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F101_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F102.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F102.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 74.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F102_max_clean.tif\n", "gsutil cp max_clean/F102_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F102_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F102_mp_score.tif\n", "gsutil cp mp_score/F102_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F102_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 205.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F102_mp_score_max.tif\n", "gsutil cp mp_score_max/F102_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F102_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F103.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F103.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 71.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F103_max_clean.tif\n", "gsutil cp max_clean/F103_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F103_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F103_mp_score.tif\n", "gsutil cp mp_score/F103_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F103_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 220.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F103_mp_score_max.tif\n", "gsutil cp mp_score_max/F103_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F103_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F104.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F104.tif...\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][ 2.9 GiB/ 2.9 GiB] 32.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F104_max_clean.tif\n", "gsutil cp max_clean/F104_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F104_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F104_mp_score.tif\n", "gsutil cp mp_score/F104_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F104_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 220.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F104_mp_score_max.tif\n", "gsutil cp mp_score_max/F104_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F104_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F105.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F105.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 43.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F105_max_clean.tif\n", "gsutil cp max_clean/F105_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F105_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F105_mp_score.tif\n", "gsutil cp mp_score/F105_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F105_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 142.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F105_mp_score_max.tif\n", "gsutil cp mp_score_max/F105_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F105_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F106.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F106.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 73.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F106_max_clean.tif\n", "gsutil cp max_clean/F106_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F106_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F106_mp_score.tif\n", "gsutil cp mp_score/F106_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F106_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 197.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F106_mp_score_max.tif\n", "gsutil cp mp_score_max/F106_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F106_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F107.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F107.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 71.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F107_max_clean.tif\n", "gsutil cp max_clean/F107_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F107_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F107_mp_score.tif\n", "gsutil cp mp_score/F107_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F107_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 219.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F107_mp_score_max.tif\n", "gsutil cp mp_score_max/F107_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F107_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F108.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F108.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 75.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F108_max_clean.tif\n", "gsutil cp max_clean/F108_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F108_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F108_mp_score.tif\n", "gsutil cp mp_score/F108_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F108_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 210.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F108_mp_score_max.tif\n", "gsutil cp mp_score_max/F108_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F108_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F109.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F109.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 62.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F109_max_clean.tif\n", "gsutil cp max_clean/F109_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F109_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F109_mp_score.tif\n", "gsutil cp mp_score/F109_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F109_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 159.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F109_mp_score_max.tif\n", "gsutil cp mp_score_max/F109_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F109_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['110', '111', '112', '113', '114', '115', '116', '117', '118', '119']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F110.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F110.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 68.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F110_max_clean.tif\n", "gsutil cp max_clean/F110_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F110_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F110_mp_score.tif\n", "gsutil cp mp_score/F110_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F110_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 164.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F110_mp_score_max.tif\n", "gsutil cp mp_score_max/F110_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F110_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F111.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F111.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 71.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F111_max_clean.tif\n", "gsutil cp max_clean/F111_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F111_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F111_mp_score.tif\n", "gsutil cp mp_score/F111_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F111_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 182.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F111_mp_score_max.tif\n", "gsutil cp mp_score_max/F111_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F111_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F112.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F112.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 70.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F112_max_clean.tif\n", "gsutil cp max_clean/F112_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F112_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F112_mp_score.tif\n", "gsutil cp mp_score/F112_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F112_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][ 3.3 GiB/ 3.3 GiB] 213.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F112_mp_score_max.tif\n", "gsutil cp mp_score_max/F112_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F112_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F113.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F113.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 48.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F113_max_clean.tif\n", "gsutil cp max_clean/F113_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F113_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F113_mp_score.tif\n", "gsutil cp mp_score/F113_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F113_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 220.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F113_mp_score_max.tif\n", "gsutil cp mp_score_max/F113_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F113_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F114.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F114.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 63.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F114_max_clean.tif\n", "gsutil cp max_clean/F114_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F114_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F114_mp_score.tif\n", "gsutil cp mp_score/F114_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F114_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 184.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F114_mp_score_max.tif\n", "gsutil cp mp_score_max/F114_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F114_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F115.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F115.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 70.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F115_max_clean.tif\n", "gsutil cp max_clean/F115_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F115_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F115_mp_score.tif\n", "gsutil cp mp_score/F115_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F115_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 178.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F115_mp_score_max.tif\n", "gsutil cp mp_score_max/F115_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F115_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F116.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F116.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 67.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F116_max_clean.tif\n", "gsutil cp max_clean/F116_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F116_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F116_mp_score.tif\n", "gsutil cp mp_score/F116_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F116_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 178.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F116_mp_score_max.tif\n", "gsutil cp mp_score_max/F116_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F116_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F117.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F117.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 43.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F117_max_clean.tif\n", "gsutil cp max_clean/F117_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F117_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F117_mp_score.tif\n", "gsutil cp mp_score/F117_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F117_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 180.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F117_mp_score_max.tif\n", "gsutil cp mp_score_max/F117_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F117_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F118.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F118.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 72.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F118_max_clean.tif\n", "gsutil cp max_clean/F118_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F118_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F118_mp_score.tif\n", "gsutil cp mp_score/F118_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F118_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 216.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F118_mp_score_max.tif\n", "gsutil cp mp_score_max/F118_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F118_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F119.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F119.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 68.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F119_max_clean.tif\n", "gsutil cp max_clean/F119_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F119_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F119_mp_score.tif\n", "gsutil cp mp_score/F119_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F119_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 221.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F119_mp_score_max.tif\n", "gsutil cp mp_score_max/F119_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F119_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['120', '121', '122', '123', '124', '125', '126', '127', '128', '129']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F120.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F120.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 38.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F120_max_clean.tif\n", "gsutil cp max_clean/F120_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F120_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F120_mp_score.tif\n", "gsutil cp mp_score/F120_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F120_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 215.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F120_mp_score_max.tif\n", "gsutil cp mp_score_max/F120_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F120_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F121.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F121.tif...\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 39.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F121_max_clean.tif\n", "gsutil cp max_clean/F121_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F121_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F121_mp_score.tif\n", "gsutil cp mp_score/F121_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F121_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 117.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F121_mp_score_max.tif\n", "gsutil cp mp_score_max/F121_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F121_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F122.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F122.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 61.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F122_max_clean.tif\n", "gsutil cp max_clean/F122_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F122_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F122_mp_score.tif\n", "gsutil cp mp_score/F122_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F122_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 185.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F122_mp_score_max.tif\n", "gsutil cp mp_score_max/F122_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F122_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F123.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F123.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 72.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F123_max_clean.tif\n", "gsutil cp max_clean/F123_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F123_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F123_mp_score.tif\n", "gsutil cp mp_score/F123_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F123_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 198.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F123_mp_score_max.tif\n", "gsutil cp mp_score_max/F123_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F123_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F124.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F124.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 70.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F124_max_clean.tif\n", "gsutil cp max_clean/F124_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F124_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F124_mp_score.tif\n", "gsutil cp mp_score/F124_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F124_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 218.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F124_mp_score_max.tif\n", "gsutil cp mp_score_max/F124_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F124_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F125.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F125.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 36.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F125_max_clean.tif\n", "gsutil cp max_clean/F125_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F125_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F125_mp_score.tif\n", "gsutil cp mp_score/F125_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F125_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 202.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F125_mp_score_max.tif\n", "gsutil cp mp_score_max/F125_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F125_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F126.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F126.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 71.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F126_max_clean.tif\n", "gsutil cp max_clean/F126_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F126_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F126_mp_score.tif\n", "gsutil cp mp_score/F126_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F126_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 83.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F126_mp_score_max.tif\n", "gsutil cp mp_score_max/F126_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F126_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F127.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F127.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 63.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F127_max_clean.tif\n", "gsutil cp max_clean/F127_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F127_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F127_mp_score.tif\n", "gsutil cp mp_score/F127_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F127_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 180.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F127_mp_score_max.tif\n", "gsutil cp mp_score_max/F127_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F127_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F128.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F128.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 66.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F128_max_clean.tif\n", "gsutil cp max_clean/F128_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F128_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F128_mp_score.tif\n", "gsutil cp mp_score/F128_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F128_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 203.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F128_mp_score_max.tif\n", "gsutil cp mp_score_max/F128_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F128_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F129.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F129.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 70.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F129_max_clean.tif\n", "gsutil cp max_clean/F129_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F129_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F129_mp_score.tif\n", "gsutil cp mp_score/F129_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F129_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][ 3.3 GiB/ 3.3 GiB] 214.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F129_mp_score_max.tif\n", "gsutil cp mp_score_max/F129_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F129_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['130', '131', '132', '133', '134', '135', '136', '137', '138', '139']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F130.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F130.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 65.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F130_max_clean.tif\n", "gsutil cp max_clean/F130_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F130_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F130_mp_score.tif\n", "gsutil cp mp_score/F130_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F130_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 215.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F130_mp_score_max.tif\n", "gsutil cp mp_score_max/F130_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F130_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F131.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F131.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 70.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F131_max_clean.tif\n", "gsutil cp max_clean/F131_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F131_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F131_mp_score.tif\n", "gsutil cp mp_score/F131_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F131_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 99.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Saving 2D score map... ./mp_score_max/F131_mp_score_max.tif\n", "gsutil cp mp_score_max/F131_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F131_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F132.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F132.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 65.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F132_max_clean.tif\n", "gsutil cp max_clean/F132_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F132_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F132_mp_score.tif\n", "gsutil cp mp_score/F132_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F132_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 202.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F132_mp_score_max.tif\n", "gsutil cp mp_score_max/F132_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F132_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F133.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F133.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 63.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F133_max_clean.tif\n", "gsutil cp max_clean/F133_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F133_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F133_mp_score.tif\n", "gsutil cp mp_score/F133_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F133_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 215.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F133_mp_score_max.tif\n", "gsutil cp mp_score_max/F133_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F133_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F134.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F134.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 76.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F134_max_clean.tif\n", "gsutil cp max_clean/F134_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F134_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F134_mp_score.tif\n", "gsutil cp mp_score/F134_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F134_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 82.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F134_mp_score_max.tif\n", "gsutil cp mp_score_max/F134_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F134_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F135.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F135.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 67.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F135_max_clean.tif\n", "gsutil cp max_clean/F135_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F135_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F135_mp_score.tif\n", "gsutil cp mp_score/F135_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F135_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 160.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F135_mp_score_max.tif\n", "gsutil cp mp_score_max/F135_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F135_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F136.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F136.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 69.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F136_max_clean.tif\n", "gsutil cp max_clean/F136_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F136_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F136_mp_score.tif\n", "gsutil cp mp_score/F136_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F136_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 214.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F136_mp_score_max.tif\n", "gsutil cp mp_score_max/F136_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F136_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F137.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F137.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 74.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F137_max_clean.tif\n", "gsutil cp max_clean/F137_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F137_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F137_mp_score.tif\n", "gsutil cp mp_score/F137_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F137_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 172.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F137_mp_score_max.tif\n", "gsutil cp mp_score_max/F137_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F137_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F138.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F138.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 69.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F138_max_clean.tif\n", "gsutil cp max_clean/F138_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F138_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F138_mp_score.tif\n", "gsutil cp mp_score/F138_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F138_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 180.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F138_mp_score_max.tif\n", "gsutil cp mp_score_max/F138_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F138_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F139.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F139.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 73.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F139_max_clean.tif\n", "gsutil cp max_clean/F139_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F139_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F139_mp_score.tif\n", "gsutil cp mp_score/F139_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F139_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 180.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F139_mp_score_max.tif\n", "gsutil cp mp_score_max/F139_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F139_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['140', '141', '142', '143', '144', '145', '146', '147', '148', '149']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F140.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F140.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 49.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F140_max_clean.tif\n", "gsutil cp max_clean/F140_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F140_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F140_mp_score.tif\n", "gsutil cp mp_score/F140_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F140_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 216.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F140_mp_score_max.tif\n", "gsutil cp mp_score_max/F140_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F140_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F141.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F141.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 69.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F141_max_clean.tif\n", "gsutil cp max_clean/F141_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F141_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F141_mp_score.tif\n", "gsutil cp mp_score/F141_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F141_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 220.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F141_mp_score_max.tif\n", "gsutil cp mp_score_max/F141_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F141_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F142.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F142.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 69.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F142_max_clean.tif\n", "gsutil cp max_clean/F142_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F142_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F142_mp_score.tif\n", "gsutil cp mp_score/F142_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F142_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 200.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F142_mp_score_max.tif\n", "gsutil cp mp_score_max/F142_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F142_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F143.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F143.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 70.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F143_max_clean.tif\n", "gsutil cp max_clean/F143_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F143_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F143_mp_score.tif\n", "gsutil cp mp_score/F143_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F143_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 208.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F143_mp_score_max.tif\n", "gsutil cp mp_score_max/F143_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F143_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F144.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F144.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 38.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F144_max_clean.tif\n", "gsutil cp max_clean/F144_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F144_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F144_mp_score.tif\n", "gsutil cp mp_score/F144_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F144_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 108.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F144_mp_score_max.tif\n", "gsutil cp mp_score_max/F144_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F144_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F145.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F145.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 69.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F145_max_clean.tif\n", "gsutil cp max_clean/F145_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F145_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F145_mp_score.tif\n", "gsutil cp mp_score/F145_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F145_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 176.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F145_mp_score_max.tif\n", "gsutil cp mp_score_max/F145_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F145_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F146.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F146.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 65.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F146_max_clean.tif\n", "gsutil cp max_clean/F146_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F146_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F146_mp_score.tif\n", "gsutil cp mp_score/F146_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F146_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][ 3.3 GiB/ 3.3 GiB] 206.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F146_mp_score_max.tif\n", "gsutil cp mp_score_max/F146_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F146_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F147.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F147.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 41.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F147_max_clean.tif\n", "gsutil cp max_clean/F147_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F147_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F147_mp_score.tif\n", "gsutil cp mp_score/F147_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F147_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 214.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F147_mp_score_max.tif\n", "gsutil cp mp_score_max/F147_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F147_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F148.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F148.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 65.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F148_max_clean.tif\n", "gsutil cp max_clean/F148_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F148_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F148_mp_score.tif\n", "gsutil cp mp_score/F148_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F148_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 129.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F148_mp_score_max.tif\n", "gsutil cp mp_score_max/F148_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F148_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F149.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F149.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 72.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F149_max_clean.tif\n", "gsutil cp max_clean/F149_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F149_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F149_mp_score.tif\n", "gsutil cp mp_score/F149_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F149_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 220.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F149_mp_score_max.tif\n", "gsutil cp mp_score_max/F149_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F149_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['150', '151', '152', '153', '154', '155', '156', '157', '158', '159']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F150.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F150.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 66.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F150_max_clean.tif\n", "gsutil cp max_clean/F150_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F150_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F150_mp_score.tif\n", "gsutil cp mp_score/F150_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F150_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 183.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F150_mp_score_max.tif\n", "gsutil cp mp_score_max/F150_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F150_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F151.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F151.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 66.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F151_max_clean.tif\n", "gsutil cp max_clean/F151_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F151_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F151_mp_score.tif\n", "gsutil cp mp_score/F151_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F151_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 175.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F151_mp_score_max.tif\n", "gsutil cp mp_score_max/F151_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F151_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F152.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F152.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 37.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F152_max_clean.tif\n", "gsutil cp max_clean/F152_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F152_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F152_mp_score.tif\n", "gsutil cp mp_score/F152_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F152_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 187.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F152_mp_score_max.tif\n", "gsutil cp mp_score_max/F152_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F152_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F153.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F153.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 65.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F153_max_clean.tif\n", "gsutil cp max_clean/F153_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F153_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F153_mp_score.tif\n", "gsutil cp mp_score/F153_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F153_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 106.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F153_mp_score_max.tif\n", "gsutil cp mp_score_max/F153_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F153_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F154.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F154.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 69.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F154_max_clean.tif\n", "gsutil cp max_clean/F154_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F154_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F154_mp_score.tif\n", "gsutil cp mp_score/F154_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F154_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 171.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F154_mp_score_max.tif\n", "gsutil cp mp_score_max/F154_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F154_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F155.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F155.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 72.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F155_max_clean.tif\n", "gsutil cp max_clean/F155_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F155_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F155_mp_score.tif\n", "gsutil cp mp_score/F155_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F155_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 114.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F155_mp_score_max.tif\n", "gsutil cp mp_score_max/F155_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F155_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F156.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F156.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 59.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F156_max_clean.tif\n", "gsutil cp max_clean/F156_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F156_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F156_mp_score.tif\n", "gsutil cp mp_score/F156_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F156_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 169.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F156_mp_score_max.tif\n", "gsutil cp mp_score_max/F156_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F156_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F157.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F157.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 68.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F157_max_clean.tif\n", "gsutil cp max_clean/F157_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F157_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F157_mp_score.tif\n", "gsutil cp mp_score/F157_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F157_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 174.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F157_mp_score_max.tif\n", "gsutil cp mp_score_max/F157_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F157_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F158.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F158.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 72.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F158_max_clean.tif\n", "gsutil cp max_clean/F158_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F158_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F158_mp_score.tif\n", "gsutil cp mp_score/F158_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F158_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 166.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F158_mp_score_max.tif\n", "gsutil cp mp_score_max/F158_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F158_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F159.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F159.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 73.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F159_max_clean.tif\n", "gsutil cp max_clean/F159_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F159_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F159_mp_score.tif\n", "gsutil cp mp_score/F159_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F159_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 174.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F159_mp_score_max.tif\n", "gsutil cp mp_score_max/F159_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F159_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['160', '161', '162', '163', '164', '165', '166', '167', '168', '169']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F160.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F160.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 37.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F160_max_clean.tif\n", "gsutil cp max_clean/F160_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F160_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F160_mp_score.tif\n", "gsutil cp mp_score/F160_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F160_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 224.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F160_mp_score_max.tif\n", "gsutil cp mp_score_max/F160_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F160_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F161.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F161.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 55.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F161_max_clean.tif\n", "gsutil cp max_clean/F161_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F161_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F161_mp_score.tif\n", "gsutil cp mp_score/F161_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F161_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 168.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F161_mp_score_max.tif\n", "gsutil cp mp_score_max/F161_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F161_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F162.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F162.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 71.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F162_max_clean.tif\n", "gsutil cp max_clean/F162_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F162_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F162_mp_score.tif\n", "gsutil cp mp_score/F162_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F162_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 129.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F162_mp_score_max.tif\n", "gsutil cp mp_score_max/F162_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F162_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F163.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F163.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 63.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F163_max_clean.tif\n", "gsutil cp max_clean/F163_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F163_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F163_mp_score.tif\n", "gsutil cp mp_score/F163_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F163_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][ 3.3 GiB/ 3.3 GiB] 117.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F163_mp_score_max.tif\n", "gsutil cp mp_score_max/F163_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F163_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F164.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F164.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 61.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F164_max_clean.tif\n", "gsutil cp max_clean/F164_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F164_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F164_mp_score.tif\n", "gsutil cp mp_score/F164_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F164_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 225.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F164_mp_score_max.tif\n", "gsutil cp mp_score_max/F164_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F164_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F165.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F165.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 74.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F165_max_clean.tif\n", "gsutil cp max_clean/F165_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F165_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F165_mp_score.tif\n", "gsutil cp mp_score/F165_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F165_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 179.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F165_mp_score_max.tif\n", "gsutil cp mp_score_max/F165_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F165_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F166.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F166.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 67.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F166_max_clean.tif\n", "gsutil cp max_clean/F166_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F166_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F166_mp_score.tif\n", "gsutil cp mp_score/F166_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F166_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 219.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F166_mp_score_max.tif\n", "gsutil cp mp_score_max/F166_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F166_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F167.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F167.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 67.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F167_max_clean.tif\n", "gsutil cp max_clean/F167_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F167_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F167_mp_score.tif\n", "gsutil cp mp_score/F167_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F167_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 147.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F167_mp_score_max.tif\n", "gsutil cp mp_score_max/F167_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F167_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F168.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F168.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 71.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F168_max_clean.tif\n", "gsutil cp max_clean/F168_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F168_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F168_mp_score.tif\n", "gsutil cp mp_score/F168_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F168_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 174.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F168_mp_score_max.tif\n", "gsutil cp mp_score_max/F168_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F168_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F169.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F169.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 75.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F169_max_clean.tif\n", "gsutil cp max_clean/F169_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F169_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F169_mp_score.tif\n", "gsutil cp mp_score/F169_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F169_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 181.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F169_mp_score_max.tif\n", "gsutil cp mp_score_max/F169_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F169_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Removing original merged...\n", "['170', '171', '172', '173', '174', '175', '176', '177', '178', '179']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F170.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F170.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 71.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F170_max_clean.tif\n", "gsutil cp max_clean/F170_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F170_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F170_mp_score.tif\n", "gsutil cp mp_score/F170_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F170_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 174.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F170_mp_score_max.tif\n", "gsutil cp mp_score_max/F170_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F170_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F171.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F171.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 68.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F171_max_clean.tif\n", "gsutil cp max_clean/F171_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F171_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F171_mp_score.tif\n", "gsutil cp mp_score/F171_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F171_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 185.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F171_mp_score_max.tif\n", "gsutil cp mp_score_max/F171_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F171_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F172.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F172.tif...\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "/ [1 files][ 2.9 GiB/ 2.9 GiB] 67.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F172_max_clean.tif\n", "gsutil cp max_clean/F172_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F172_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F172_mp_score.tif\n", "gsutil cp mp_score/F172_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F172_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 215.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F172_mp_score_max.tif\n", "gsutil cp mp_score_max/F172_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F172_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F173.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F173.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 70.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F173_max_clean.tif\n", "gsutil cp max_clean/F173_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F173_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F173_mp_score.tif\n", "gsutil cp mp_score/F173_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F173_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 186.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F173_mp_score_max.tif\n", "gsutil cp mp_score_max/F173_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F173_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F174.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F174.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 65.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F174_max_clean.tif\n", "gsutil cp max_clean/F174_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F174_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F174_mp_score.tif\n", "gsutil cp mp_score/F174_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F174_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 216.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F174_mp_score_max.tif\n", "gsutil cp mp_score_max/F174_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F174_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F175.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F175.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 70.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F175_max_clean.tif\n", "gsutil cp max_clean/F175_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F175_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F175_mp_score.tif\n", "gsutil cp mp_score/F175_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F175_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 175.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F175_mp_score_max.tif\n", "gsutil cp mp_score_max/F175_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F175_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F176.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F176.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 68.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F176_max_clean.tif\n", "gsutil cp max_clean/F176_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F176_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F176_mp_score.tif\n", "gsutil cp mp_score/F176_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F176_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 86.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F176_mp_score_max.tif\n", "gsutil cp mp_score_max/F176_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F176_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F177.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F177.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 70.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F177_max_clean.tif\n", "gsutil cp max_clean/F177_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F177_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F177_mp_score.tif\n", "gsutil cp mp_score/F177_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F177_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 185.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F177_mp_score_max.tif\n", "gsutil cp mp_score_max/F177_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F177_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F178.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F178.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 65.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F178_max_clean.tif\n", "gsutil cp max_clean/F178_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F178_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F178_mp_score.tif\n", "gsutil cp mp_score/F178_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F178_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 172.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F178_mp_score_max.tif\n", "gsutil cp mp_score_max/F178_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F178_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F179.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F179.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 76.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F179_max_clean.tif\n", "gsutil cp max_clean/F179_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F179_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F179_mp_score.tif\n", "gsutil cp mp_score/F179_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F179_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 124.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F179_mp_score_max.tif\n", "gsutil cp mp_score_max/F179_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F179_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['180', '181', '182', '183', '184', '185', '186', '187', '188', '189']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F180.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F180.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 66.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F180_max_clean.tif\n", "gsutil cp max_clean/F180_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F180_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F180_mp_score.tif\n", "gsutil cp mp_score/F180_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F180_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 181.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F180_mp_score_max.tif\n", "gsutil cp mp_score_max/F180_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F180_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F181.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F181.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 64.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F181_max_clean.tif\n", "gsutil cp max_clean/F181_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F181_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F181_mp_score.tif\n", "gsutil cp mp_score/F181_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F181_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 209.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F181_mp_score_max.tif\n", "gsutil cp mp_score_max/F181_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F181_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F182.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F182.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 71.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F182_max_clean.tif\n", "gsutil cp max_clean/F182_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F182_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F182_mp_score.tif\n", "gsutil cp mp_score/F182_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F182_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 219.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F182_mp_score_max.tif\n", "gsutil cp mp_score_max/F182_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F182_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F183.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F183.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 66.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F183_max_clean.tif\n", "gsutil cp max_clean/F183_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F183_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F183_mp_score.tif\n", "gsutil cp mp_score/F183_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F183_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 137.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F183_mp_score_max.tif\n", "gsutil cp mp_score_max/F183_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F183_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F184.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F184.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 65.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F184_max_clean.tif\n", "gsutil cp max_clean/F184_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F184_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F184_mp_score.tif\n", "gsutil cp mp_score/F184_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F184_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 122.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F184_mp_score_max.tif\n", "gsutil cp mp_score_max/F184_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F184_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F185.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F185.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 60.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F185_max_clean.tif\n", "gsutil cp max_clean/F185_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F185_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F185_mp_score.tif\n", "gsutil cp mp_score/F185_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F185_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 177.6 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F185_mp_score_max.tif\n", "gsutil cp mp_score_max/F185_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F185_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F186.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F186.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 75.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F186_max_clean.tif\n", "gsutil cp max_clean/F186_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F186_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F186_mp_score.tif\n", "gsutil cp mp_score/F186_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F186_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 214.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F186_mp_score_max.tif\n", "gsutil cp mp_score_max/F186_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F186_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F187.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F187.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 72.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F187_max_clean.tif\n", "gsutil cp max_clean/F187_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F187_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F187_mp_score.tif\n", "gsutil cp mp_score/F187_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F187_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 122.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F187_mp_score_max.tif\n", "gsutil cp mp_score_max/F187_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F187_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F188.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F188.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 66.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F188_max_clean.tif\n", "gsutil cp max_clean/F188_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F188_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F188_mp_score.tif\n", "gsutil cp mp_score/F188_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F188_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 141.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F188_mp_score_max.tif\n", "gsutil cp mp_score_max/F188_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F188_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F189.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F189.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 71.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F189_max_clean.tif\n", "gsutil cp max_clean/F189_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F189_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F189_mp_score.tif\n", "gsutil cp mp_score/F189_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F189_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 218.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F189_mp_score_max.tif\n", "gsutil cp mp_score_max/F189_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F189_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['190', '191', '192', '193', '194', '195', '196', '197', '198', '199']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F190.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F190.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 70.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F190_max_clean.tif\n", "gsutil cp max_clean/F190_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F190_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F190_mp_score.tif\n", "gsutil cp mp_score/F190_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F190_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 166.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F190_mp_score_max.tif\n", "gsutil cp mp_score_max/F190_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F190_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F191.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F191.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 72.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F191_max_clean.tif\n", "gsutil cp max_clean/F191_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F191_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F191_mp_score.tif\n", "gsutil cp mp_score/F191_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F191_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 180.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F191_mp_score_max.tif\n", "gsutil cp mp_score_max/F191_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F191_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F192.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F192.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 72.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F192_max_clean.tif\n", "gsutil cp max_clean/F192_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F192_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F192_mp_score.tif\n", "gsutil cp mp_score/F192_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F192_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 137.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F192_mp_score_max.tif\n", "gsutil cp mp_score_max/F192_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F192_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F193.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F193.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 66.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F193_max_clean.tif\n", "gsutil cp max_clean/F193_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F193_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F193_mp_score.tif\n", "gsutil cp mp_score/F193_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F193_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 176.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F193_mp_score_max.tif\n", "gsutil cp mp_score_max/F193_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F193_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F194.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F194.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 73.0 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F194_max_clean.tif\n", "gsutil cp max_clean/F194_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F194_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F194_mp_score.tif\n", "gsutil cp mp_score/F194_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F194_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 112.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F194_mp_score_max.tif\n", "gsutil cp mp_score_max/F194_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F194_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F195.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F195.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 69.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F195_max_clean.tif\n", "gsutil cp max_clean/F195_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F195_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F195_mp_score.tif\n", "gsutil cp mp_score/F195_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F195_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 194.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F195_mp_score_max.tif\n", "gsutil cp mp_score_max/F195_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F195_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F196.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F196.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 60.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F196_max_clean.tif\n", "gsutil cp max_clean/F196_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F196_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F196_mp_score.tif\n", "gsutil cp mp_score/F196_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F196_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 208.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F196_mp_score_max.tif\n", "gsutil cp mp_score_max/F196_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F196_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F197.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F197.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 69.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F197_max_clean.tif\n", "gsutil cp max_clean/F197_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F197_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F197_mp_score.tif\n", "gsutil cp mp_score/F197_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F197_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][ 3.3 GiB/ 3.3 GiB] 176.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F197_mp_score_max.tif\n", "gsutil cp mp_score_max/F197_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F197_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F198.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F198.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 66.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F198_max_clean.tif\n", "gsutil cp max_clean/F198_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F198_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F198_mp_score.tif\n", "gsutil cp mp_score/F198_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F198_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 222.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F198_mp_score_max.tif\n", "gsutil cp mp_score_max/F198_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F198_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F199.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F199.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 39.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F199_max_clean.tif\n", "gsutil cp max_clean/F199_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F199_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F199_mp_score.tif\n", "gsutil cp mp_score/F199_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F199_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 176.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F199_mp_score_max.tif\n", "gsutil cp mp_score_max/F199_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F199_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['200', '201', '202', '203', '204', '205', '206', '207', '208', '209']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F200.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F200.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 70.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F200_max_clean.tif\n", "gsutil cp max_clean/F200_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F200_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F200_mp_score.tif\n", "gsutil cp mp_score/F200_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F200_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 215.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F200_mp_score_max.tif\n", "gsutil cp mp_score_max/F200_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F200_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F201.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F201.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 69.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F201_max_clean.tif\n", "gsutil cp max_clean/F201_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F201_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F201_mp_score.tif\n", "gsutil cp mp_score/F201_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F201_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][ 3.3 GiB/ 3.3 GiB] 201.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F201_mp_score_max.tif\n", "gsutil cp mp_score_max/F201_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F201_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F202.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F202.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 69.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F202_max_clean.tif\n", "gsutil cp max_clean/F202_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F202_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F202_mp_score.tif\n", "gsutil cp mp_score/F202_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F202_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 180.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F202_mp_score_max.tif\n", "gsutil cp mp_score_max/F202_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F202_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F203.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F203.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 33.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F203_max_clean.tif\n", "gsutil cp max_clean/F203_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F203_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F203_mp_score.tif\n", "gsutil cp mp_score/F203_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F203_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 183.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F203_mp_score_max.tif\n", "gsutil cp mp_score_max/F203_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F203_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F204.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F204.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 71.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F204_max_clean.tif\n", "gsutil cp max_clean/F204_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F204_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F204_mp_score.tif\n", "gsutil cp mp_score/F204_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F204_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 138.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F204_mp_score_max.tif\n", "gsutil cp mp_score_max/F204_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F204_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F205.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F205.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 65.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F205_max_clean.tif\n", "gsutil cp max_clean/F205_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F205_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F205_mp_score.tif\n", "gsutil cp mp_score/F205_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F205_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 175.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F205_mp_score_max.tif\n", "gsutil cp mp_score_max/F205_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F205_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F206.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F206.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 67.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F206_max_clean.tif\n", "gsutil cp max_clean/F206_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F206_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F206_mp_score.tif\n", "gsutil cp mp_score/F206_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F206_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 177.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F206_mp_score_max.tif\n", "gsutil cp mp_score_max/F206_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F206_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F207.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F207.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 41.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F207_max_clean.tif\n", "gsutil cp max_clean/F207_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F207_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F207_mp_score.tif\n", "gsutil cp mp_score/F207_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F207_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 175.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F207_mp_score_max.tif\n", "gsutil cp mp_score_max/F207_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F207_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F208.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F208.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 53.3 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F208_max_clean.tif\n", "gsutil cp max_clean/F208_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://max_clean/F208_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F208_mp_score.tif\n", "gsutil cp mp_score/F208_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F208_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 219.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F208_mp_score_max.tif\n", "gsutil cp mp_score_max/F208_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F208_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F209.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F209.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 70.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F209_max_clean.tif\n", "gsutil cp max_clean/F209_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F209_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F209_mp_score.tif\n", "gsutil cp mp_score/F209_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F209_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][ 3.3 GiB/ 3.3 GiB] 169.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F209_mp_score_max.tif\n", "gsutil cp mp_score_max/F209_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F209_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['210', '211', '212', '213', '214', '215', '216', '217', '218', '219']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F210.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F210.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 61.9 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F210_max_clean.tif\n", "gsutil cp max_clean/F210_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F210_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F210_mp_score.tif\n", "gsutil cp mp_score/F210_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F210_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 184.4 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F210_mp_score_max.tif\n", "gsutil cp mp_score_max/F210_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F210_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F211.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F211.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 35.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F211_max_clean.tif\n", "gsutil cp max_clean/F211_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F211_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F211_mp_score.tif\n", "gsutil cp mp_score/F211_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F211_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 214.8 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F211_mp_score_max.tif\n", "gsutil cp mp_score_max/F211_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F211_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F212.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F212.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 62.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F212_max_clean.tif\n", "gsutil cp max_clean/F212_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F212_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F212_mp_score.tif\n", "gsutil cp mp_score/F212_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score/F212_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 166.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F212_mp_score_max.tif\n", "gsutil cp mp_score_max/F212_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F212_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F213.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F213.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 67.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F213_max_clean.tif\n", "gsutil cp max_clean/F213_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F213_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F213_mp_score.tif\n", "gsutil cp mp_score/F213_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F213_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 204.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F213_mp_score_max.tif\n", "gsutil cp mp_score_max/F213_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F213_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F214.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F214.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 69.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F214_max_clean.tif\n", "gsutil cp max_clean/F214_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F214_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F214_mp_score.tif\n", "gsutil cp mp_score/F214_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F214_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 181.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F214_mp_score_max.tif\n", "gsutil cp mp_score_max/F214_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F214_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F215.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F215.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 68.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F215_max_clean.tif\n", "gsutil cp max_clean/F215_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F215_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F215_mp_score.tif\n", "gsutil cp mp_score/F215_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F215_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 222.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F215_mp_score_max.tif\n", "gsutil cp mp_score_max/F215_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F215_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F216.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F216.tif...\n", "- [1 files][ 2.9 GiB/ 2.9 GiB] 65.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F216_max_clean.tif\n", "gsutil cp max_clean/F216_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F216_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F216_mp_score.tif\n", "gsutil cp mp_score/F216_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F216_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 220.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F216_mp_score_max.tif\n", "gsutil cp mp_score_max/F216_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying file://mp_score_max/F216_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F217.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F217.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 69.7 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F217_max_clean.tif\n", "gsutil cp max_clean/F217_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F217_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F217_mp_score.tif\n", "gsutil cp mp_score/F217_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F217_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 207.1 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F217_mp_score_max.tif\n", "gsutil cp mp_score_max/F217_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F217_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F218.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F218.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 67.2 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F218_max_clean.tif\n", "gsutil cp max_clean/F218_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F218_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F218_mp_score.tif\n", "gsutil cp mp_score/F218_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F218_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 218.0 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F218_mp_score_max.tif\n", "gsutil cp mp_score_max/F218_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F218_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F219.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F219.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 70.8 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F219_max_clean.tif\n", "gsutil cp max_clean/F219_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F219_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F219_mp_score.tif\n", "gsutil cp mp_score/F219_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F219_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 180.7 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F219_mp_score_max.tif\n", "gsutil cp mp_score_max/F219_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F219_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n", "['220', '221', '222', '223', '224']\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F220.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F220.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 64.5 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F220_max_clean.tif\n", "gsutil cp max_clean/F220_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F220_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F220_mp_score.tif\n", "gsutil cp mp_score/F220_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F220_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][ 3.3 GiB/ 3.3 GiB] 187.9 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F220_mp_score_max.tif\n", "gsutil cp mp_score_max/F220_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F220_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F221.tif merged\n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F221.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 1.4 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F221_max_clean.tif\n", "gsutil cp max_clean/F221_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F221_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F221_mp_score.tif\n", "gsutil cp mp_score/F221_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F221_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 152.5 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F221_mp_score_max.tif\n", "gsutil cp mp_score_max/F221_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F221_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F222.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F222.tif...\n", "| [1 files][ 2.9 GiB/ 2.9 GiB] 62.6 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F222_max_clean.tif\n", "gsutil cp max_clean/F222_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F222_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F222_mp_score.tif\n", "gsutil cp mp_score/F222_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F222_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 210.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F222_mp_score_max.tif\n", "gsutil cp mp_score_max/F222_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F222_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "| [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F223.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F223.tif...\n", "\\ [1 files][ 2.9 GiB/ 2.9 GiB] 66.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n" ] }, { "name": "stdout", "output_type": "stream", "text": [ "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F223_max_clean.tif\n", "gsutil cp max_clean/F223_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F223_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F223_mp_score.tif\n", "gsutil cp mp_score/F223_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F223_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 215.2 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F223_mp_score_max.tif\n", "gsutil cp mp_score_max/F223_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F223_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "gsutil cp gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F224.tif merged\n", "Copying gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/merged/F224.tif...\n", "/ [1 files][ 2.9 GiB/ 2.9 GiB] 73.1 MiB/s \n", "Operation completed over 1 objects/2.9 GiB. \n", "(10, 38, 2015, 2018)\n", "Prepare CP inputs\n", "Channel Size 38\n", "Saving BCG_NORM_Max_REORDERED... ./max_clean/F224_max_clean.tif\n", "gsutil cp max_clean/F224_max_clean.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/max_clean\n", "Copying file://max_clean/F224_max_clean.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "/ [1 files][387.8 MiB/387.8 MiB] \n", "Operation completed over 1 objects/387.8 MiB. \n", "Start Matching Pursuit\n", "Channel Size 38\n", "(10, 22, 2015, 2018)\n", "Saving 3D score map... ./mp_score/F224_mp_score.tif\n", "gsutil cp mp_score/F224_mp_score.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score\n", "Copying file://mp_score/F224_mp_score.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "- [1 files][ 3.3 GiB/ 3.3 GiB] 222.3 MiB/s \n", "Operation completed over 1 objects/3.3 GiB. \n", "Saving 2D score map... ./mp_score_max/F224_mp_score_max.tif\n", "gsutil cp mp_score_max/F224_mp_score_max.tif gs://fc-secure-9289bfef-e5cb-493a-83d5-e604cd429e39/Brian/101222_D10_Coverslip1_Processed/mp_score_max\n", "Copying file://mp_score_max/F224_mp_score_max.tif [Content-Type=image/tiff]...\n", "==> NOTE: You are uploading one or more large file(s), which would run \n", "significantly faster if you enable parallel composite uploads. This\n", "feature can be enabled by editing the\n", "\"parallel_composite_upload_threshold\" value in your .boto\n", "configuration file. However, note that if you do this large files will\n", "be uploaded as `composite objects\n", "`_,which\n", "means that any user who downloads such objects will need to have a\n", "compiled crcmod installed (see \"gsutil help crcmod\"). This is because\n", "without a compiled crcmod, computing checksums on composite objects is\n", "so slow that gsutil disables downloads of composite objects.\n", "\n", "\\ [1 files][341.3 MiB/341.3 MiB] 2.4 MiB/s \n", "Operation completed over 1 objects/341.3 MiB. \n", "##############################################################################\n", "Removing exported files\n", "Removing original merged...\n" ] } ], "source": [ "for ii in range(0,len(allFOVs),10): # For each CHUNK (10 FOVs per loop)\n", " print(allFOVs[ii:ii+10])\n", " \n", " # download chunk\n", " for fov in allFOVs[ii:ii+10]: # for each fov in CHUNK\n", " cmd = 'gsutil cp ' + SOURCE + IN_DIR + f'/F{fov}.tif {IN_DIR}'\n", " print(cmd)\n", " ! {cmd}\n", " \n", " img_merged = imread(f'{IN_DIR}/F{fov}.tif') # load input image\n", " print(img_merged.shape)\n", " \n", " # CP \n", " print(\"Prepare CP inputs\")\n", " img_max = img_merged.max(0) # take max projection # ZCYX\n", " img_max = BackgroundSubtract2D(img_max, markers)\n", " img_norm = QuantileNormalize(img_max, 0.75, 0.999) ## dtype = float32\n", " im_to_save = img_norm[final_inds].copy()\n", " \n", " fname=f'F{fov}_max_clean.tif'\n", " tifffile.imwrite(f'./{CP_DIR}/'+fname, im_to_save, imagej = True,\n", " photometric='minisblack', metadata={'axes':'CYX'})\n", " print('Saving BCG_NORM_Max_REORDERED...', f'./{CP_DIR}/'+fname) \n", " export = f'gsutil cp ' + f'{CP_DIR}/'+fname + ' ' + SOURCE + CP_DIR\n", " print(export)\n", " ! {export}\n", " \n", " # MP\n", " print(\"Start Matching Pursuit\")\n", " x = prepare_MPinput(img_merged, codebook, markers)\n", " A = codebook.values.copy().T\n", " \n", " max_components = 3\n", " fudge_factor = 0.25\n", " \n", " z = matching_pursuit(x,A,max_components, fudge_factor)\n", " z = z.clip(0, np.inf)\n", " z = z.astype(np.float32)\n", " \n", " # convert back to CZYX --> ZCYX\n", " z = z.transpose(1,0,2,3)\n", " print(z.shape)\n", " \n", " fname = f'F{fov}_mp_score.tif'\n", " tifffile.imwrite(f'./{MP_DIR}/'+fname, z, imagej = True,\n", " photometric='minisblack', metadata={'axes':'ZCYX'})\n", " print('Saving 3D score map...', f'./{MP_DIR}/'+fname)\n", " export = f'gsutil cp ' + f'{MP_DIR}/'+fname + ' ' + SOURCE + MP_DIR\n", " print(export)\n", " ! {export}\n", " \n", " fname = f'F{fov}_mp_score_max.tif'\n", " tifffile.imwrite(f'./{MP_MAX_DIR}/'+fname, z.max(0), imagej = True,\n", " photometric='minisblack', metadata={'axes':'CYX'})\n", " print('Saving 2D score map...', f'./{MP_MAX_DIR}/'+fname) \n", " export = f'gsutil cp ' + f'{MP_MAX_DIR}/'+fname + ' ' + SOURCE + MP_MAX_DIR\n", " print(export)\n", " ! {export}\n", " \n", " \n", " \n", " # remove files from memory\n", " del img_merged\n", " del z\n", " del x\n", " del img_norm\n", " del im_to_save\n", " \n", " \n", " print('##############################################################################')\n", " \n", " \n", " # remove files \n", " print(\"Removing exported files\")\n", " cmd = f'rm {MP_DIR}/*'\n", " ! {cmd}\n", " \n", " cmd = f'rm {MP_MAX_DIR}/*'\n", " ! {cmd} \n", " \n", " cmd = f'rm {CP_DIR}/*'\n", " ! {cmd}\n", " \n", " # clear memory and files for next round of chunk\n", " print(\"Removing original merged...\")\n", " cmd = f\"rm {IN_DIR}/*\" # merged\n", " ! {cmd}\n", " " ] }, { "cell_type": "code", "execution_count": null, "id": "bdb8f861", "metadata": {}, "outputs": [], "source": [] }, { "cell_type": "code", "execution_count": null, "id": "fd7a6968", "metadata": {}, "outputs": [], "source": [ "A.shape" ] }, { "cell_type": "code", "execution_count": null, "id": "6b3911bd", "metadata": {}, "outputs": [], "source": [ "#z=z.transpose(1,0,2,3)\n", "cm = plt.get_cmap('tab20')\n", "cm.set_bad('k')\n", "plt.figure(figsize=(12,12))\n", "plt.gca().matshow(np.where(z.max(1).max(0)==0,np.nan,z.max(1).argmax(0)),cmap=cm)" ] }, { "cell_type": "code", "execution_count": null, "id": "d57fbc8a", "metadata": {}, "outputs": [], "source": [ "x.shape" ] }, { "cell_type": "code", "execution_count": null, "id": "c9535450", "metadata": {}, "outputs": [], "source": [ "fig,axs= plt.subplots(2,4,figsize=(20,10))\n", "axs=axs.ravel()\n", "for i in range((x.shape[0])):\n", " axs[i].imshow(x.max(1)[i])\n" ] }, { "cell_type": "code", "execution_count": null, "id": "4ba98a68", "metadata": {}, "outputs": [], "source": [ "im_max = imread(f'{CP_DIR}/F000_max_clean.tif')\n", "im_max.shape" ] }, { "cell_type": "code", "execution_count": null, "id": "f3f5718c", "metadata": {}, "outputs": [], "source": [ "fig,axs= plt.subplots(5,5,figsize=(25,25))\n", "axs=axs.ravel()\n", "for i in range((im_max.shape[0])):\n", " axs[i].imshow(im_max[i, :1000,:1000])\n" ] }, { "cell_type": "code", "execution_count": null, "id": "0e6dc36c", "metadata": {}, "outputs": [], "source": [ "fig,axs= plt.subplots(5,5,figsize=(25,25))\n", "axs=axs.ravel()\n", "for i in range((im_max.shape[0])):\n", " axs[i].imshow(im_max[i, :1000,:1000], vmin=np.quantile(im_max[i],0.05), \n", " vmax = np.quantile(im_max[i], 0.95))\n" ] }, { "cell_type": "code", "execution_count": null, "id": "b938ad95", "metadata": {}, "outputs": [], "source": [ "img_merged.shape" ] }, { "cell_type": "code", "execution_count": null, "id": "821f2416", "metadata": {}, "outputs": [], "source": [ "fig,axs= plt.subplots(5,8,figsize=(25,25))\n", "axs=axs.ravel()\n", "for i in range((im_max.shape[0])):\n", " axs[i].imshow(img_merged.max(0)[i, :1000,:1000], vmin=np.quantile(img_merged.max(0)[i],0.05), \n", " vmax = np.quantile(img_merged.max[i], 0.95))\n" ] } ], "metadata": { "kernelspec": { "display_name": "Python 3 (ipykernel)", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.7.12" } }, "nbformat": 4, "nbformat_minor": 5 }